Conserved Protein Domain Family
ABCC_MsbA

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cd03251: ABCC_MsbA 
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Statistics
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PSSM-Id: 213218
Aligned: 19 rows
Threshold Bit Score: 386.201
Created: 4-Aug-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                             ## ###                                    
P63360      342 LEFRNVTFTYpgre-vpaLRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 420 Salmonella typhi
NP_279266   379 VVYDDVRFGYddd--daiVEHIDFQVDGGDTLALVGPTGAGKSTVLKLLLRMYDVDAGAVRVDGQDISGVTLPSLRRHVG 456 Halobacterium sp...
NP_296100   350 VEFQGVSFGYspda-ppvLRDLNLKIRAGEFVALVGASGVGKSTLCALIPRFYDVSAGQVLVDGHDVCGVTLASLRRSVG 428 Deinococcus radi...
NP_285672   359 VRFVDVGFTYaga---paLQDITFDVPAGQVVALVGPSGAGKTTLVNLIPRFWDVTAGRVEVDGHDVRAYALADLRRQVG 435 Deinococcus radi...
ZP_00310096 344 VSLKNIGFKYeeh---evLKHISIDIPKGKLIALVGPSGGGKSTLVDLIPRFYDPATGSVEIDGVNIKDYTLNSLRSYIG 420 Cytophaga hutchi...
YP_136457   378 VEFDDVTFGYgde--ppvVRDVSLDVPDGATVGLAGATGAGKSTLLKLVPRFHDVDSGAVRVDGVDVREYGLQSLRSEIA 455 Haloarcula maris...
NP_388749   350 VEFQNVSFQYekdk-eniLHDVSLKVNRGETVALVGMSGGGKSTLVSLIPRFYDVTSGRLLIDGTDIRDYEARSLRNQVG 428 Bacillus subtili...
ZP_00525651 362 IAFENVAFHYpgapdgfrIPNLSLTVKAGEVVALVGPSGGGKTTLANFLPRFYDPTSGSVKIDGHDVREFSLSSLRSQIG 441 Solibacter usita...
BAB82002    332 ITIKDVTFRYdnk--esiLENFNLDIEAGKMVALVGPSGGGKTTICNLIPRFYDYESGQIFIDDVDISTVTLKSLRENIG 409 Clostridium perf...
NP_695398   353 VDFNDVVFRYekdg-rniLNLVDFHVEPGRTIALVGPTGAGKTTIINLLSRFYDVSEGSVTIDGYDVRDVTLASLRRQMG 431 Bifidobacterium ...
Feature 1          #                                                                            
P63360      421 LVSQNVHLFNDTVANNIAYArteey----------------sreqIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484 Salmonella typhi
NP_279266   457 YVSQDTFLFYGTVEENITYGtfda-----------------dreaVVDAAKAAEAHEFIQNLPDGYDTEVGERGVKLSGG 519 Halobacterium sp...
NP_296100   429 VVQQDVYLFSGTVMENIRYGrpga-----------------teaeAMDAARQAGAHDFITRLPQGYHTDIGQRGVKLSGG 491 Deinococcus radi...
NP_285672   436 LVPQETLLFSGTVAENILYGrpga-----------------sqaeVEAAAHAAHAHEFICELEGGYGAVVGERGVKLSGG 498 Deinococcus radi...
ZP_00310096 421 IVTQESILFNDTIFNNIAFGlpni-----------------tqedVERAARIANAHEFIIRTEKGYQTSIGERGSKLSGG 483 Cytophaga hutchi...
YP_136457   456 IVEQQPYLFSGTVAENIAYGdrevldaeqsddeargsswetardrVRDAAEAAQAHEFIEDLPDGYDTQIGERGIKLSGG 535 Haloarcula maris...
NP_388749   429 MVLQDTFLFSETIRENIAIGkpda-----------------tleeIIEAAKAANAHEFIMSFPEGYETRVGERGVKLSGG 491 Bacillus subtili...
ZP_00525651 442 LVAQDTFLFNDTVANNIAYGrdgv-----------------ppeaIRAAAETALAHEFITRLPEGYETVIGDRGVKLSGG 504 Solibacter usita...
BAB82002    410 IVQQDVFLFTGTIKENIMYGnpna-----------------tdeeVIEAAKNACLHDFIMGLEDGYDTFIGERGVKLSGG 472 Clostridium perf...
NP_695398   432 VMLQDTFIFSGNVRENIRYGklda-----------------tdeeIEAAAKAVHAHEFIMELPDGYDTVVEERGSTLSAG 494 Bifidobacterium ...
Feature 1                           ##                              #                           
P63360      485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSE 564 Salmonella typhi
NP_279266   520 QRQRIDIARAILKDPEILVLDEATSDVDTETEMLIQRSLDRLTEDRTTFSIAHRLSTIKDADQIVVLEDGEIVERGTHAD 599 Halobacterium sp...
NP_296100   492 QKQRLSIARVFLKDPPILIFDEATSSLDNESERLVQESLERLARRRTTLVIAHRLSTVRNAHRIVVLTENGVAEEGSHAE 571 Deinococcus radi...
NP_285672   499 QRQRVAIARAILKDPRILILDEATSALDNESEALVQAALERLMVGRTTFVVAHRLSTIRSADRILVMDAGRVVADGTHEG 578 Deinococcus radi...
ZP_00310096 484 QRQRLSIARAVLKNPDILILDEATSALDNESEKLVQEALNYLMKDRTSIVIAHRLSTIRHADMILVLDKGQIKEQGTHEQ 563 Cytophaga hutchi...
YP_136457   536 QRQRVAIARALLNDPEIIIFDEATSDVDTETEDRIQESIEQLVADRTAFVIAHRLSTIQDADRIVVMDDGKIVERGSHTD 615 Haloarcula maris...
NP_388749   492 QKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMDKLAKDRTTFVVAHRLSTITHADKIVVMENGTIIEIGTHDE 571 Bacillus subtili...
ZP_00525651 505 QRQRLSIARALLKNAPILILDEATSHLDTESEMLVQKALANLMEHRTVIVIAHRLSTIRRADKIVVLEKGQIRETGTHEE 584 Solibacter usita...
BAB82002    473 QKQRISIARVFLKNPAILILDEATSALDNVTEYEIQKALEELSKDRTTLVVAHRLSTVKNSDEIVVLTDKGIEERGTHEE 552 Clostridium perf...
NP_695398   495 QRQLIAFARVLLADPRILILDEATSNIDTRTEEALQAGLQHLLKGRTSFIIAHRLSTIENADEIFYIDHGQIVEHGSHAQ 574 Bifidobacterium ...
Feature 1                   
P63360      565 LLAQHGVYAQLH 576 Salmonella typhi
NP_279266   600 LLGDEGLYANLW 611 Halobacterium sp. NRC-1
NP_296100   572 LLALGGEYARLQ 583 Deinococcus radiodurans R1
NP_285672   579 LMAAGGLYRELY 590 Deinococcus radiodurans R1
ZP_00310096 564 LLAQEGIYYKLH 575 Cytophaga hutchinsonii
YP_136457   616 LLAADGDYADLW 627 Haloarcula marismortui ATCC 43049
NP_388749   572 LMDYESQYKHLF 583 Bacillus subtilis subsp. subtilis str. 168
ZP_00525651 585 LVSRGGIYQRLH 596 Solibacter usitatus Ellin6076
BAB82002    553 LIKLGGVYSNLH 564 Clostridium perfringens str. 13
NP_695398   575 LLAAKGAYYRLY 586 Bifidobacterium longum NCC2705

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