Conserved Protein Domain Family
ABCC_cytochrome_bd

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cd03247: ABCC_cytochrome_bd 
ATP-binding cassette domain of CydCD, subfamily C
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Statistics
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PSSM-Id: 213214
Aligned: 9 rows
Threshold Bit Score: 236.441
Created: 18-Apr-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            ## ###                                     
P23886      339 LTLRDVQFTYpeqsqqaLKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRawdpqqGEILLNdspiaslneaalrqtISV 418 Escherichia coli
NP_978340   338 IELNHVSYSYphsnevaLKDVSLQIKAGKKIAILGRSGTGKSTLLKLLTGalsplhGEVLLNsehaht---nllskyISV 414 Bacillus cereus ...
ZP_00064241 339 INFNQVTFKYgdk--tiVDNLSFEVQPKEKIALLGRSGAGKTTLLKLLAGdiqsslGEVTIDetpvqnl-qgsmsslVAV 415 Leuconostoc mese...
ZP_00046818 342 LRVSNISFTYpgedypiIQNFSLTLKRGQKAALIGPSGAGKSTILQLILGdlkprqGTVTLDrfnvlel-qkersklFSV 420 Lactobacillus ga...
CAD47443    343 FSVKNLSFQYkpqekwvLHHLDLDIKEGEKIAILGRSGSGKSTLASLLRGdlkasqGKITLGgadvsiv-gdcisnyIGV 421 Streptococcus ag...
P45081      338 ISAKNLNFSYpeqetlvLKNLTLDLEQGKKIAILGKTGSGKSSLLQLLVRnydanqGELLLAekpisayseetlrhqICF 417 Haemophilus infl...
P94367      337 LAFRDVTFSYdns-sqvLHNFSFTLRQGEKMALLGRSGSGKSTSLALIEGalkpdsGSVTLNgvetall-kdqiadaVAV 414 Bacillus subtilis
NP_266863   336 LVINNLQFSFeen-kkiFDNFNLEVKQGEHIALLGRSGVGKSTLAGLIRGdlvpqsGSIQFSgvepska--knveekIGV 412 Lactococcus lact...
NP_719316   341 LQIHDIHFGYlen-qhvLQGLSLEIKPGQKVALLGSTGCGKSSLLSLITRdwqaqsGQIYLDghllsdysecalrsaMTV 419 Shewanella oneid...
Feature 1         #                                                                             
P23886      419 VPQrvhLFSATLRDNLllaspgssdealseilrrv--------gleklledaglnswlgegGRQLSGGELRRLAIARALL 490 Escherichia coli
NP_978340   415 LNQkphLFDTTIGNNVrigkqeatdeeiwkalekaq------lashivslpdglqtkmhemGKRFSGGERQRVAFARTLM 488 Bacillus cereus ...
ZP_00064241 416 LDQqayLFDTTIMNNVrmgnihatdeqvqkvieqag------lqplinsltngyytqmqeaGTRFSGGERQRFALARIML 489 Leuconostoc mese...
ZP_00046818 421 LNQepfLFNTTIYENLkmanpdasadqmmqilekvq------ladfvnslpkkldtevaeaGARFSGGQKERLALARVLL 494 Lactobacillus ga...
CAD47443    422 IQQapyLFNTTLLNNIrignqdaseedvwkvlervg------lkemvtdlsdglytmvdeaGLRFSGGERHRIALARILL 495 Streptococcus ag...
P45081      418 LTQrvhVFSDTLRQNLqfasadkisdeqmiemlhqv-----glsklleqegkglnlwlgdgGRPLSGGEQRRLGLARILL 492 Haemophilus infl...
P94367      415 LNQkphLFDTSILNNIrlgngeasdedvrraakqvk------lhdyieslpdgyhtsvqetGIRFSGGERQRIALARILL 488 Bacillus subtilis
NP_266863   413 INQspyLFATSLRSNLtlaklnasdaeiwealelvg------lrkmveslpqklltpvdeaGERFSGGERQRLALARVLL 486 Lactococcus lact...
NP_719316   420 VSQriyLYAGTLRENLaialpvpegqkrtandarfidvlqqvglgdllkgdkpldmwigegGRQLSGGEQRRIGVARALL 499 Shewanella oneid...
Feature 1               ##                              #                       
P23886      491 HdAPLVLLDEPTEGLDatTESQILELLAEMmrektVLMVTHRLRGLsrfQQIIVMDnGQIIEQG 554 Escherichia coli
NP_978340   489 QeAPIIVLDEPTIGLDpkTELSLIETMFSAteektVIWITHHLVGMehvDEVIFLDrGQIVMQG 552 Bacillus cereus ATCC 10987
ZP_00064241 490 QdAPIVVLDEPTVSLDpkTEYEVLSQIFSVlkdrtIIWVTHHLTGIenvDKVYFLEnGKFTLSG 553 Leuconostoc mesenteroides subsp....
ZP_00046818 495 QdTQIVLLDEPTVGLDplTEQKLLNLVFDVlknktVVWVTHHLQGVkymNEVLFFKdGKVTMQG 558 Lactobacillus gasseri
CAD47443    496 KdVPIVILDEPTVGLDpiTEQALLRVFMKElegktLVWITHHLKGIehaDRILFIEnGQLELEG 559 Streptococcus agalactiae NEM316
P45081      493 NnASILLLDEPTEGLDreTERQILRLILQHaenktLIIVTHRLSSIeqfDKICVIDnGRLIEEG 556 Haemophilus influenzae
P94367      489 QdTPIIILDEPTVGLDpiTERELMETVFEVlkgktILWITHHLAGVeaaDKIVFLEnGKTEMEG 552 Bacillus subtilis
NP_266863   487 SdVDVVILDEPTVSLDpiTENQLLSLFFEQlrdksIIFITHHLLGVhhmDRVLFLEnGSIKFDG 550 Lactococcus lactis subsp. lactis...
NP_719316   500 RdAPLLLLDEPTEGLDkrTEREILSLLFEFakdktLLMISHRLTAMakmDQIHLMAeGKIMASG 563 Shewanella oneidensis MR-1

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