Conserved Protein Domain Family
ABCC_Protease_Secretion

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cd03246: ABCC_Protease_Secretion 
ATP-binding cassette domain of PrtD, subfamily C
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Statistics
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PSSM-Id: 213213
Aligned: 20 rows
Threshold Bit Score: 234.418
Created: 18-Apr-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            ## ###                                     
P23596      331 LSVEQVSLRTaqg-ntrLQNIHFSLQAgETLVILGASGSGKSSLARLLVGaqsptqGKVRLDgadlnqvdkntfgptIGY 409 Erwinia chrysant...
ZP_00279718 492 IEVSNLRFRYadtepwvIKDCSFTVEPgESVALIGPSGQGKTTMAKLLLGllmpqkGEIRVDgvdikklgmlgyrdmIGS 571 Burkholderia fun...
NP_720385   501 LSLENVSFRYgenepevVSNLSLDIQAgESVAIVGASGCGKTTLVKLMLGllvpssGRILLDgqaiqqigltqyrqqIAA 580 Shewanella oneid...
AAQ57747    487 IELRNVSFRYsdsepyvLRELSLAIPAgQCLAVTGASGCGKTTLLKLVLGlmepteGEVLIGgvplrqlglsnyrqlLGT 566 Chromobacterium ...
YP_068639   492 FEARNIAFQYdnlskpiFSDLNIHVEAgESVAITGPSGIGKTTLMKVIAGlltpsqGHILIDgldittvglnnyrdcIAC 571 Yersinia pseudot...
AAQ62059    476 LSLRGVSFRYgegepwvLRDVSLDIPPgQSVALTGPSGGGKTTLAKILLGllqpqsGEVLVDgvpiarlgpgrhralIGT 555 Chromobacterium ...
AAM89122    487 IEVCGIGFRYaddapavLEEVNIRIGSgECVAITGPSGCGKTTLVKVILGllqpstGQVKIGgrpltraalahyrgiVGT 566 Xanthomonas oryz...
NP_773610   380 LVVDNVDVRLagtnhllLNGVSFSLMPgECLGIIGPSGSGKSLLGQVIAGlsmpthGRVVLDntdvslfreglkgdrLGY 459 Bradyrhizobium j...
NP_774312   334 LQVERVTFRIggtqrpiLAGISFQCRPsELIVVIGPTGAGKSTLLRLMAGlerptsGTIRLDhaalhtwdpdqlgqfVGY 413 Bradyrhizobium j...
YP_128488   500 IRLENICFRYsdnaewiLFNISFEIKAgESIAITGPSGCGKTTVLKIILGllkptsGRIYLDgiesssiklsdyrqcFGA 579 Photobacterium p...
Feature 1         #                                                                             
P23596      410 LPQdvqLFKGSLAENIarfgdadpekvvaaaklagvh-elilslpngydtelgdggggLSGGQRQRIGLARAMYGdPCLL 488 Erwinia chrysant...
ZP_00279718 572 VMQddiLFAGSIADNIsffdthpdyaqvervariaqihdeitampmgyqslvgdmgssLSGGQAQRVLLARALYRnPSIL 651 Burkholderia fun...
NP_720385   581 VMQddtLLSGSIADNItffdpepnyvkmqqcaqlavidmdiahmpmgynslvgdmgnqFSGGQVQRLLLARALYQsPSIL 660 Shewanella oneid...
AAQ57747    567 VMQddlLFSGSIADNIcffdpqpdqdrirrcaqlaaihdeimampmnyntlvgdigsgLSGGQKQRVLLARALYKqPRLL 646 Chromobacterium ...
YP_068639   572 VLQddkLFAGSIADNIasfdvnkdeqrilscanhcnihkeimhmpmgyetliselggsLSGGQKQRLLIARALYRqPSLL 651 Yersinia pseudot...
AAQ62059    556 VLQedmLLSGSLLGNIsffdetvdyarvaacarqvgmhedilampmgyhtlvgeqgagLSGGQRQRLLLARALYKrPSIL 635 Chromobacterium ...
AAM89122    567 VMQddlLFTGSVSENIsffdpepdqgqiercariagvhqeveqmplgyasllseagtgLSGGQRQRVLLARALYRaPRIL 646 Xanthomonas oryz...
NP_773610   460 LPQdinLLGDTINDIIarlddadrrkvieaaklvgi--hgaimrlplgydtvvqseatFSRGYRQRLGLARAFFGsPRLI 537 Bradyrhizobium j...
NP_774312   414 LPQdvqLLDGTVAEAIagfdecardeaivaaamlaqahemilslpagyqteigrdgcrLSGGQRQRLGLARAFFGdRKLI 493 Bradyrhizobium j...
YP_128488   580 VMQndiLLSGTLIENItlfdaqyneellneccemaciiddidalpmgynslvgdmgnnFSGGQLQRIFLARALYKkPKIL 659 Photobacterium p...
Feature 1         ##                               #                   
P23596      489 ILDEPNASLDsegdqaLMQAIVALqkrgatVVLITHRPALTtlaQKILILHeGQQ 543 Erwinia chrysanthemi
ZP_00279718 652 ILDEATSHLDvdrerlINDAIRNMev---tRIIIAHRPETIrsaDRIIAMQqGVA 703 Burkholderia fungorum LB400
NP_720385   661 FMDEATSHLDimneakISEQIKNLnm---tRIIIAHRPETIkqaDRVVVMHqGKI 712 Shewanella oneidensis MR-1
AAQ57747    647 VLDEATSHLDvwneqlVNAAVRDIdm---tRILVAHRPETIamaERVVVLEqGRI 698 Chromobacterium violaceum ATCC 12472
YP_068639   652 FLDEATSHLDlaneahINNAIASLki---tRIFIAHRPSTIasaQRIINLEkQNV 703 Yersinia pseudotuberculosis IP 32953
AAQ62059    636 LLDEATSHLDigneraIGEVLARLrl---tRVMVAHRPETIataERVLVLAdGRV 687 Chromobacterium violaceum ATCC 12472
AAM89122    647 VLDEATSHLDvinehrVNHAIQAMqv---tRIIVAHRRETVsmaARVITLErGRV 698 Xanthomonas oryzae pv. oryzae
NP_773610   538 VLDEPNASLDyggermLLDAIERMklagviLVVITHRMGLLaatDKIAIMEdGAV 592 Bradyrhizobium japonicum USDA 110
NP_774312   494 LLDEPNANLDpdgeeaLCSAIQSAkargaaSVIVTHRPRLLtiaDAVLLLRdGNQ 548 Bradyrhizobium japonicum USDA 110
YP_128488   660 CLDESTSHLDqknegwINQNISMLsm---tRIVIAHRKETIesvDRVLKLNeIGV 711 Photobacterium profundum SS9

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