1E3M


Conserved Protein Domain Family
ABC_MutS_homologs

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cd03243: ABC_MutS_homologs 
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ATP-binding cassette domain of MutS homologs
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.
Statistics
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PSSM-Id: 213210
Aligned: 23 rows
Threshold Bit Score: 197.472
Created: 26-Jan-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site
  • Structure:Mg-ADP bound; 3.5A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                             ## ###                  
1E3M_A    579 RITEGRHPvveqv------------------lnepFIANPLNLSPqrrXLIITGPNXGGKSTYXRQTALIALXAYIGSYV 640 Escherichia coli
AAF11527  298 DLHEARHPli-----------------------enPVANDIQLGEt-kLLLITGPNMGGKTATLKTLGLAVLMHQCGLYV 353 Deinococcus radiod...
NP_602664 238 EYNGIRPVvskkkeivledainlevkevleaknkkYTPISIKLNVg--TTMITGANMGGKSVALKTIAENVLLFQMGFFV 315 Fusobacterium nucl...
NP_622383 242 EYNGVKPTindeikilfedvinpqvadilktqekeFTPLTIELKSg--TTVITGANMGGKTVALRTFALNLLLSMMGFFP 319 Thermoanaerobacter...
AAQ66186  237 NYMGLVHPhvlsll---------------gkkgekFQPVDIALPSl--PTLITGANMAGKSVLLQGVALAQILYQYGFYV 299 Porphyromonas ging...
NP_623482 259 EEVYLYEGfdlalayd------------kvtkgetVVVNDFWLENgerLVVVTGPNQGGKTTFARMFGQVHYLAKLGVPI 326 Thermoanaerobacter...
CAD67927  310 KSEYVEDAfdialas-------------glldtrqLVFNDFYLENperVIVVTGPNQGGKTTFARMIGQLHYLAALGLPI 376 Thermotoga sp. RQ2
CAD67928  294 AFRGLYDLsllli------------------ksnrVISTDLNTRGk-rVFFIMGANRGGKTTFLRSIGQAQLMMQAGMFV 354 Thermotoga sp. RQ2
NP_840904 417 VVSGARNPllvr-------------------trpdYVSNDIVLDNdkhLLIVTGPNSGGKTAYCKTVVQIQLLAQAGAYV 477 Nitrosomonas europ...
NP_869172 522 AFQGLGHPllk---------------------deaRITNDVTIGPtgtLLLVTGSNMSGKSTMLRSAGLNVALAMAGGPV 580 Rhodopirellula bal...
Feature 1                       #                                              ##             
1E3M_A    641 PAQKVEIgp-iDRIFTRVGaaddLASGRSTFXVEXTETANILHNat------------eYSLVLXDEIGRGTSTYDGLSL 707 Escherichia coli
AAF11527  354 AAASARLpv-vRDILVDIGdeqsIEASLSTFASHLKHLRYVLRHaa------------pDTLVLVDELGSGTDPDEGAAL 420 Deinococcus radiod...
NP_602664 316 FAKYASIplldFIFFVSDDmq-dISKGLSTFGAEIIKLKEINSYvk-----------ngTGLIVFDEFARGTNPKEGQKF 383 Fusobacterium nucl...
NP_622383 320 FAKKVSFpmldFIHFISEDlq-sISRGLSSFGAEVMKLKEVIEDvk-----------kgTGFVALDEIARGTNPEEGLYI 387 Thermoanaerobacter...
AAQ66186  300 PAQKAEIcp-vEKVMLSLGdaqdIRQGLSSFGAEMMCLSSIADEarq----------gkQLLVLVDEPARTTNPVEGQAI 368 Porphyromonas ging...
NP_623482 327 PGKKAKIfl-cDKIFTHFEreekVQNLRGKLEADLLEIKQIINMat------------pMSLIILNETFSSATVADAIFL 393 Thermoanaerobacter...
CAD67927  377 PARRARLfl-pDAIFTHFEreerVQDQMSKLENDILRVKDILESts------------sESLIILNEIFSSAALSDALFL 443 Thermotoga sp. RQ2
CAD67928  355 PASYFESnv-cKGIFTHFKreedPSLKRGKFEEELVRMNEIVLHlh------------rRSMVLFNESFSSTNEMEGSEV 421 Thermotoga sp. RQ2
NP_840904 478 PAVQARAvp-aEHIFYQIPdpgqLEEGMGRFAHELKQTREIFFNst------------pRSLVVLDELAEGTTFEEKMTL 544 Nitrosomonas europ...
NP_869172 581 CCRHMSLp--pVEMGTSIRvsddLSQGVSYYMAELNRLSAVVTHarklaeqraagstnrIQFFLLDEILQGTNSRERQIA 658 Rhodopirellula bal...
Feature 1                         #                                                           
1E3M_A    708 AWACAENlankikalTLFATHYFELTqlpe---kxegVANVHLDALEhg-----dtIAFXHSVQDGAas----------- 768 Escherichia coli
AAF11527  421 AQSLIETlleq-darGIITSHLSPLKlfal---etpgLKNASMGFAVg-------tLAPTYQLQVGQpg----------- 478 Deinococcus radiod...
NP_602664 384 VRALAKYlnek-ssiSIITTHFDSVVeknmkhyqvvgLKNLDFESLKnr-----lkANNSLELIQDNmdftlee-siete 456 Fusobacterium nucl...
NP_622383 388 VKAISKYlngf-ssmTVLATHYEGVIeddmvhyqvvgLKNVNFEELRqki---vidEENSVKILQEHmdyrlervdpnce 463 Thermoanaerobacter...
AAQ66186  369 VSGLLAIlsry-kirSLVTTHYGSIDipc------rrLKVRGFREDKv-------nLPLQVNSLSKCvdytlee-vsend 433 Porphyromonas ging...
NP_623482 394 AKNVIAKilei-dcyALYVTFLDELTsige----kvvSMVATVSEQDp--------SIKTYKILRKPad----------- 449 Thermoanaerobacter...
CAD67927  444 SKEIMKTiler-dclCVWVTFLDELSrmne----kivSMVATVSPQDp--------AVRTFKIIRKPad----------- 499 Thermotoga sp. RQ2
CAD67928  422 AYQIVRAllds-rvkVFYVTHVYELArrft---gderVMFLQAERKPt--------GERTFKIKEGLps----------- 478 Thermotoga sp. RQ2
NP_840904 545 SEYVLKGfhql-gatTILVTHNHELCerlq---qeniGNYLQVEFVS---------EKPSHRLIPGIsr----------- 600 Nitrosomonas europ...
NP_869172 659 VARVLRFlvda-gaiGAITTHDLELAddpe---lmklAHTVHFRETItpdasgderMTFDYKMRDGVsp----------- 723 Rhodopirellula bal...
Feature 1                   
1E3M_A    769 -kSYGLAVAALAGV 781 Escherichia coli
AAF11527  479 -rSYALAIANRMGL 491 Deinococcus radiodurans R1
NP_602664 457 vpKDALNIAKLIGL 470 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
NP_622383 464 vpKDALNICRIFGL 477 Thermoanaerobacter tengcongensis MB4
AAQ66186  434 vpHEAIRIAEILGV 447 Porphyromonas gingivalis W83
NP_623482 450 gkAYAILLAEKYGL 463 Thermoanaerobacter tengcongensis MB4
CAD67927  500 grSYAVSLAEKYGL 513 Thermotoga sp. RQ2
CAD67928  479 qtSHAKDIYLKVFR 492 Thermotoga sp. RQ2
NP_840904 601 -iSHADRIASAIGF 613 Nitrosomonas europaea ATCC 19718
NP_869172 724 -tTNALRLLEIVGL 736 Rhodopirellula baltica SH 1

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