Conserved Protein Domain Family
ABC_RecF

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cd03242: ABC_RecF 
ATP-binding cassette domain of RecF
RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Statistics
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PSSM-Id: 213209
Aligned: 15 rows
Threshold Bit Score: 261.078
Created: 1-Apr-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                         ## ###                                            
NP_683234         3 LKSLHLRHFRNYSEQSVTFAAPKTILVGDNAQGKSNLLEAVEWLAtlqshrthrDRDLIQQGHe-sAQIEATLERQGVPl 81  Thermosynech...
Q9RVE0            6 LSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALtgqt-daprIEQLIQAGEt-eAYVRADLQQGGSLs 83  Deinococcus ...
P05651            3 IQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSmakshrtsnDKELIRWDKd-yAKIEGRVMKQNGAi 81  Bacillus sub...
REF_tigr:MT0003   3 VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTtlgshrvsaDLPLIRVGTd-rAVISTIVVNDGREc 81  Mycobacteriu...
Q59586            3 VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTtlgshrvsaDLPLIRVGTd-rAVISTIVVNDGREc 81  Mycobacteriu...
Q9CE70            3 LKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLAltrshrtshDKELISWSQq-eMKVSGVVEKAHATv 81  Lactococcus ...
Q92FU8            3 LESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLAlakshrttnDKDFIMWEKe-eAKMEGRVVKRGQTv 81  Listeria inn...
Q97N32            3 IKNLYLDNFRNYDNIEIDFNKKVNILTGNNAQGKTNILESIFYCSlgkshrtnkDKELIKWDKd-eAFIRLNLSRKPLDk 81  Clostridium ...
P56903            7 LTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSpgrglrraaYADVARVGAp--DGFSVFAAVDGMEg 84  Sinorhizobiu...
Q8YED7           16 IRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSpgrglrraaYDDVARANAeggFAIHAALDCMIYGd 95  Brucella mel...
Feature 1                                    #                                                      
NP_683234        82 dlavslr-----pssgrvlRVNGCTVKrtADFLGQLNAVEFSCLDLELVRGTPAIRRNWLDRILLQLEPLYSQLLQTYQK 156 Thermosynech...
Q9RVE0           84 iqevg--------lgrgrrQLKVDGVRarTGDLPRGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYER 155 Deinococcus ...
P05651           82 pmqlvi------skkgkkgKVNHIEQQklSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQK 155 Bacillus sub...
REF_tigr:MT0003  82 avdleia-----tgrvnkaRLNRSSVRstRDVVGVLRAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYER 156 Mycobacteriu...
Q59586           82 avdleia-----tgrvnkaRLNRSSVRstRDVVGVLRAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYER 156 Mycobacteriu...
Q9CE70           82 plevql------spkgriaKANHLKENrlADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNR 155 Lactococcus ...
Q92FU8           82 plelai------tqkgkraKVNHLEQKklSQYVGNLNVVIFAPEDLSLVKGAPGVRRRFLNMEIGQMQPIYLHNLSEYQR 155 Listeria inn...
Q97N32           82 kieikif-----kggkkgiNINSIKLKkiSELFGIFNVVMFSPEDLKIVKESPGHRRKFLDMEISKLDHRYYYKLVQYNK 156 Clostridium ...
P56903           85 sveigtgtqgteegqsrrlRINGTAARtvDELTDHLRVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDR 164 Sinorhizobiu...
Q8YED7           96 aeigtgta--gggeggrkvRINRIAASa-DDLLDYARILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEK 172 Brucella mel...
Feature 1                                                                                           
NP_683234       157 ALRQRNALLKqagsqgwdealwqawnqqlvingtriirrrqrlierlaplaqdwhrvl-----------sgdretltlsy 225 Thermosynech...
Q9RVE0          156 TVSQRNAALRggeewamhvwddvllklgteimlfrrraltrldelareana--------------------------qlg 209 Deinococcus ...
P05651          156 ILSQRNHFLKqlqtrkqtdrtmldvltdqlvevaakvvvkrlqftaqlekwaqpihagi---------srgleeltlkyh 226 Bacillus sub...
REF_tigr:MT0003 157 VLRQRTALLKsvpgaryrgdrgvfdtlevwdsrlaehgaelvaaridlvnqlapevkkayqllapesrsasigyrasmdv 236 Mycobacteriu...
Q59586          157 VLRQRTALLKsvpgaryrgdrgvfdtlevwdsrlaehgaelvaaridlvnqlapevkkayqllapesrsasigyrasmdv 236 Mycobacteriu...
Q9CE70          156 ALKERNAYLKfdkdkidknflsvldgqlaehgnkimlerqnfidklevhakki----------------------heqlt 213 Lactococcus ...
Q92FU8          156 ILQQRNQYLKmlqmkrkvdpmlldilteqfadvainltkrradfiqkleayaapihhqi----------srgletlkiey 225 Listeria inn...
Q97N32          157 ILDQRNIMLRnkkflnndmisvydeqlskfgssliesrikylnklnekgkiihsd-----------------itkgkeei 219 Clostridium ...
P56903          165 AMRSRNRLLSefrpdpawlsaieremaglgismalarqemlgllsalversrsdgt---------------fpsaslsla 229 Sinorhizobiu...
Q8YED7          173 AMRSRNRLLNdgsnddqwldaienqmaelgtaiaaaraqamrliaamierlpaegpf--------------pkadcfleg 238 Brucella mel...
Feature 1                                                                                           
NP_683234       226 eshvplgdgtseaivaafsealatrraieflqktslvGPHRDDVGFCLNAQSa-RQFASQGQQRTLVLALKLAELALves 304 Thermosynech...
Q9RVE0          210 srktlaltltestspetyaadlrgrraeelargstvtGPHRDDLLLTLGDFPa-SDYASRGEGRTVALALRRAELELlre 288 Deinococcus ...
P05651          227 taldvsdpldlskigdsyqeafsklrekeiergvtlsGPHRDDVLFYVNGRDv-QTYGSQGQQRTTALSLKLAEIDLihe 305 Bacillus sub...
REF_tigr:MT0003 237 tgpseqsdtdrqllaarllaalaarrdaelergvclvGPHRDDLILRLGDQPa-KGFASHGEAWSLAVALRLAAYQLlr- 314 Mycobacteriu...
Q59586          237 tgpseqsdidrqllaarllaalaarrdaelergvclvGPHRDDLILRLGDQPa-KGFASHGEAWSLAVALRLAAYQLlr- 314 Mycobacteriu...
Q9CE70          214 hgkenlkiiynqnvktdfskellsrqdhdifrhqtsvGPHRDDLQFFINEINv-ADFGSQGQQRTVALSIKLAEIDLife 292 Lactococcus ...
Q92FU8          226 kasvtlngddpevwkadllqkmesikqreidrgvtliGPHRDDSLFYINGQNv-QDFGSQGQQRTTALSVKLAEIDLihe 304 Listeria inn...
Q97N32          220 eftylthvkgreniseelfslfkdsykrdvekgntsvGPHRDDFSIKINGIDa-RSFGSQGQQRTSVLTIKFASIQIike 298 Clostridium ...
P56903          230 gflddcagipafeleerylamlaegrardaaagrtldGPHRSDLLIRHREKDieAERCSTGEQKALLVGLVLAHARLvgd 309 Sinorhizobiu...
Q8YED7          239 alesrigveaaldleedfrrtlrdgrardraagrtldGPHRTDLIVQHRPKSmpAALCSTGEQKALLIGLILAHARLtae 318 Brucella mel...
Feature 1                     ##                            #                           
NP_683234       305 vvGDTPLLLLDDVLAELDLQRQGILLEVMGDRy-qTLMTTTHLAPFAAPwr--qQAQILKVTa-GTIA 368 Thermosynechococcus elon...
Q9RVE0          289 kfGEDPVLLLDDFTAELDPHRRQYLLDLAASVp-qAIVTGTELAPGAALt---lRAQAGRFTp-VADE 351 Deinococcus radiodurans
P05651          306 eiGEYPILLLDDVLSELDDYRQSHLLHTIQGRv-qTFVTTTSVDGIDHEtl--rQAGMFRVQn-GALV 369 Bacillus subtilis
REF_tigr:MT0003 315 vdGGEPVLLLDDVFAELDVMRRRALATAAESAe-qVLVTAAVLEDIPAGwdarrVHIDVRADdtGSMS 381 Mycobacterium tuberculos...
Q59586          315 vdGGEPVLLLDDVFAELDVMRRRALATAAESAe-qVLVTAAVLEDIPAGwdarrVHIDVRADdtGSMS 381 Mycobacterium tuberculosis
Q9CE70          293 etGEYPILLLDDVMSELDNHRQLDLIETSLGKt-qTFITTTTLDHLKNLp---eNLSIFHVNa-GTIE 355 Lactococcus lactis subsp...
Q92FU8          305 etGEYPVLLLDDVLSELDDYRQSHLLGAIEGKv-qTFVTTTSTSGIDHNtl--rQATTFYVEk-GTVK 368 Listeria innocua
Q97N32          299 isSETPVLLLDDVLSELDESRQEYILNSLEGIq--TLITCTGIGDIEKYlk--nDFNVFRIDn-GRIA 361 Clostridium acetobutylicum
P56903          310 mtGHAPVLLLDEIAAHLDQGRRAALFDLVDGLggqSFMTGTDRAMFDALg---eRAQYLAVAn-GRVS 373 Sinorhizobium meliloti
Q8YED7          319 lsGMAPILLLDEIAAHLDMGRRAALFGILDELggqAFMTGTDRALFDALa---gDAQFFNVSa-GQLT 382 Brucella melitensis

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