Conserved Protein Domain Family
ABC_RecN

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cd03241: ABC_RecN 
ATP-binding cassette domain of RecN
RecN ATPase involved in DNA repair; similar to ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Statistics
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PSSM-Id: 213208
Aligned: 39 rows
Threshold Bit Score: 153.512
Created: 21-Mar-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     ## ###                                            
Q9K974        2 LVELSIKQFAIIEQLTVSFDKGLTVLTGETGAGKSIIIDAIGLLLGgr--gSAEYVRYGEKrae---ieGLFILEPKHPA 76  Bacillus halodurans
AAC06789      2 LGRLYIQNFFFIRDVEVEFERGLNVITGETGTGKSMTISAIEFLMGkq--gDYPEGTAVELel----lgEEEIILRREVK 75  Aquifex aeolicus...
NP_971907     2 LENISVKNIALIDSLFVEFENGLNVLSGETGAGKSILIGSLTFLLGgk--tSTDLIRSGTDeaa---vsGSFFIGNEHSE 76  Treponema dentic...
YP_007676     2 LKQLRIQNIILVENADISFSSGLNILTGETGSGKSAIMHGLSLAIGer--vDTSLIRKGCDkgi---veAIFDIDRLDLN 76  Parachlamydia sp...
NP_603175     7 LRELKIENLAIIDELDIEFEKGFIVLTGETGAGKSIILSGINLLIGek--aSVDMIRDGEEnlv---aqGVFDVDEEQKK 81  Fusobacterium nu...
NP_893830     2 LIQLTLKNIALIEIIEINFEKGLNIFTGDSGSGKSLILDSLNVLFGgsnipLNHLIRPGKEecl---ieAKFSNSSQVTD 78  Prochlorococcus ...
ZP_00370538   2 ISRILMKENLGFKEANLELSEGLTVFSGLSGAGKSVLFKGILAAFGfg-esEAKFVELELDdkl---dlESFGIESESEN 77  Campylobacter up...
ZP_00369068   2 IESILIKENLGFKQAKLDLEEGLTVFTGLSGAGKSVLFKAILAAFAls-esEAKMVEILLNdel---elDEFGIENEELN 77  Campylobacter la...
NP_907754     6 ISRLLIKNSPAFAHESLELHEGFNVFSGASGAGKSLLMESILALFGlr-esNAELIEGVLEipy---slEEWGVAHEEET 81  Wolinella succin...
AAP77892      2 VKRILIHNSPAFSDLELYVQKGFNVFSGASGSGKSVFMESLLAIFGik-esNADLIEANIEidlptfdwLEYGIPNDNEN 80  Helicobacter hep...
Feature 1                                                                       #               
Q9K974       77 FAkaealgiqaddgm-ivlrrdvtnqgkSICRINGKLVTLGILREigqSLVDIHGQHEHQTLLHKEQHLSLLDHfagppl 155 Bacillus halodurans
AAC06789     76 KGr-------------------------SRYYVNGKGASKSTVLElleGKISLQGQNEFINLFREDFQRKLLDTfanlnd 130 Aquifex aeolicus...
NP_971907    77 ALkwladhgiepensrilirrnlkqngrSNAWIQSTPVTRNELEDftsLLVDIHGQHDHQSLFRIVEHRRFLDSfaginn 156 Treponema dentic...
YP_007676    77 NLleeggidheshqd-liirreiaitgkNRIFINNQSAQASFLRKlgsQIVQIVGQRANQNLFNLDYHREVLDIygglsp 155 Parachlamydia sp...
NP_603175    82 KLeamgididgdei---iirrsysrsgkARAFINNVRITLTDLKEiasTLVDIVGQHSHQMLLNKNNHIKLLDSflnkde 158 Fusobacterium nu...
NP_893830    79 WFskngfykisgeifvkrksyiknnkilSKYTINNFSISKKLLEElglLLVDFAGQSDSVLYDNQDYRRSIIDDlgskel 158 Prochlorococcus ...
ZP_00370538  78 IFkilk-------------------eksTKYFINNQSIAKKSLQSl-sKSFIKYLSVKDNNEFSNEKFLTLLDAlesakn 137 Campylobacter up...
ZP_00369068  78 VFkllk-------------------dknSRYFINNQLISKKNLALl-sKKFIKYLSAKENNEFSNERFLNLLDFmqsked 137 Campylobacter la...
NP_907754    82 TFsilk-------------------kekVRYFVNSQSLSKKRVAEi-aSGFIKHVNPKNGEELEPARLLGLLDGfilhqe 141 Wolinella succin...
AAP77892     81 EIvlsil-----------------kkdkTRYFINHASSSKKKLYEi-vSGFAKHISTKGADELKPANILKILDLfitren 142 Helicobacter hep...
Feature 1                                                                                       
Q9K974      156 etvldeykelykqylalerqlaqltenekemaqktdlfqyqlkeieaanlepgedkrleaerlklanaeklfksvhdayn 235 Bacillus halodurans
AAC06789    131 kvkelekvynslrkkeqelfeflrkkeeliqkkdylefrvreveeigisseeyeelknkanlinnlekvkkavgeslykl 210 Aquifex aeolicus...
NP_971907   157 evkmftslyaelaekrtelenlnlsekelaekqellqfaideitkaklkedekeeleaeekrlnqfeklfealntasqlf 236 Treponema dentic...
YP_007676   156 flqrykesyvyenelkkrldlliqqdahrmreidickseweeleeaqlksgedeelfteyailfnseelsektreinqal 235 Parachlamydia sp...
NP_603175   159 kdikenlasllyqyreidskiedierekretlekkefyeyqleeieklklkdgedelleveykrvfnaekirekvyesle 238 Fusobacterium nu...
NP_893830   159 ktinfeiknmwqefqnlrkrrqdmmhsykqkeennfvikemykvleeanlnsgneifelqskelrlsnnfdinnsiqlsl 238 Prochlorococcus ...
ZP_00370538 138 pkfnetkekfeqifkeynenslklnrileeerrieelkeltqthiekiskinpksgeyeellklkkrlskrdkieeawnk 217 Campylobacter up...
ZP_00369068 138 kkfqdflneykniykeytenktklekiqeeekkveelkeftsfeiqkiqsvnpkigefdelmsfkkrlskkdkidaawnr 217 Campylobacter la...
NP_907754   142 psfkellesyaerfleltrvkeelkrvaeeesrveelkefarfeiakirqinpkkgeheelmrlkkslskkekiqescek 221 Wolinella succin...
AAP77892    143 pthkeilnqfqtdyqalcqahkklsdiqaqeanianlkefaafeiakiesinpkegeyeelitlkkmlskqekikeqiyk 222 Helicobacter hep...
Feature 1                                                                                       
Q9K974      236 nlygegrglewinnalthiedassydpelgklqqhvqeqyylleeamftlrdyldklefdptrlemiesrlhelqklkrk 315 Bacillus halodurans
AAC06789    211 legensvyeilgeirknlakvesysgkfseliekianleee--------vyelynslkeempeiseeevneineklfriq 282 Aquifex aeolicus...
NP_971907   237 sdesgiisltkkamhnletakncdegledlskrletgyyelddisssidsylsklifnperveqvqerlsliykltkkyg 316 Treponema dentic...
YP_007676   236 tgekvsilailnrqkqnleslshfdpilkeveqslqsvflel------qeishtlrhyqnklnhnperlqivnerlslln 309 Parachlamydia sp...
NP_603175   239 ylkndddsalslitnsirnieylgkyderytelakrienayyel---edcaneiediskgidvtendldkiasrmntlkr 315 Fusobacterium nu...
NP_893830   239 dnlnsykneapsisyliaqsikqlskvvqydskikdlyenlmniq-sdvenlifalteyseelenedisleeiqkrlfyl 317 Prochlorococcus ...
ZP_00370538 218 vggifeyekavldalnlsevdanffsecfn-------------------------------elriiaenqkmeeldfdie 266 Campylobacter up...
ZP_00369068 218 askifelesvviealqisgvdssffsecl--------------------------------nelrvvwenqsfddfdfdi 265 Campylobacter la...
NP_907754   222 verflegersvnaflellgrekeffesvmne-----------------------------lralieeerghlleleemda 272 Wolinella succin...
AAP77892    223 vrqalelsrgfeeflglvdkscpnlieglne----------------------------feaivqaqeerledlaeinpe 274 Helicobacter hep...
Feature 1                                                                                       
Q9K974      316 ygdsvdaiveyastieeqldsilhkddrikqleqsletmrldlevesaaltnirkqiameltesiheqlralymektsfe 395 Bacillus halodurans
AAC06789    283 rleekykksfpeilkeveeikeelsnlnsvdfkeeelreeveklreeydklaeevsrdrrkkaedleerieeilkelnle 362 Aquifex aeolicus...
NP_971907   317 atihdvlnyaqnaeeqleslskreagkseleqkigilqskllklgrilsekrkeassklqkeveevlsnlgmpktkfqvr 396 Treponema dentic...
YP_007676   310 rlkrkyggtidevihyqqeikqklyrlentdieieelkielqqvqtdtnnlartlsekrvllarqlqtalstqlhslnmp 389 Parachlamydia sp...
NP_603175   316 ikekykrtlpelieyredlkeklsdidsgdfktkelkkelnkikdeydkiaekltnsrkeiavkienellnelkflnmed 395 Fusobacterium nu...
NP_893830   318 qnlertfslelpklilkkdelkkfvdtnlfeeeiktldiqinnsqanlntlfevqsfqrrktayqlqdsvisilknlgle 397 Prochlorococcus ...
ZP_00370538 267 alldrisdlsylikryesiegaletlelkkkelehyenlsfekkelellnrdlkeklekkahllsearvrnlgiledfln 346 Campylobacter up...
ZP_00369068 266 eevldrieklssliskygsieealealekkkaelahyenlsfekkeleekvqsarmlldeksqnlstlrkkrlkelekll 345 Campylobacter la...
NP_907754   273 eslldrlekladlnrryggeeealaylvqkqkeleryenltfskealqkeltqlekstkalssrlhesrlsyvpklesll 352 Wolinella succin...
AAP77892    275 eildkiaalselnrrfggikealayleeqkqklqeyenlsfdkqhlqkrvdelsleckknaqllhtnrerfvpqfnalfq 354 Helicobacter hep...
Feature 1                                                                             ##        
Q9K974      396 vkfhetaegkkpfrenGVDDVEFyls-tnPGEPVKPLAKVASGGEISRIMLALKTIFsnh--qgVTSVIFDEVDTGVSGR 472 Bacillus halodurans
AAC06789    363 raklkveikeseptkyGKDKIEFlf--ssYGKDFKPLEEVASGGELSRLFLALSLILp-----aSETYVFDEVDAGISGE 435 Aquifex aeolicus...
NP_971907   397 vdtrlpegnklsanpyGFDDIEFmis-pnAGEPLRPLAKIASGGELSRVMLALKTVLaeg--deADTLIFDEIDTGIGGE 473 Treponema dentic...
YP_007676   390 kaefkviiepqkrtliGDDKIEFflq-pnVGEHQIALKDGASGGEISRVLLALQTILagk--ekILTLIFDEVDANIGGE 466 Parachlamydia sp...
NP_603175   396 aklkvqinklermtneGYDDVEFfis-tnVGQDLKPLNKIASGGEVSRVMLALKVIFskv--dnIPILIFDEIDTGIGGE 472 Fusobacterium nu...
NP_893830   398 nadfsikfskvtasseGNENIDFlfs-anPDQKLAPLSKVISGGEMSRFLLAIKSSIsq----kPNTFFLDEIDNGLSGK 472 Prochlorococcus ...
ZP_00370538 347 dylaklymknlkldcvQNDEINLfgkdeiKLSVSETKLKNLSSGELNRLRLAFIATEckilnsgRGIIFLDEIDANLSGK 426 Campylobacter up...
ZP_00369068 346 nfyleklymkevklelKDCALSIlgkdevSLNINEASLKNLSSGEINRLRLSFIATEcnvtnkaSGIIFLDEIDANLSGK 425 Campylobacter la...
NP_907754   353 nerlgalllpcaklalEESTLHAkgqdwvRLMLGNAKAESVSSGEFNRLRLALLALEarh-skrLGVLILDEIDSNLSGE 431 Wolinella succin...
AAP77892    355 elcaelrlnqsnikieNVKMNESges-lcEIKLGNSSVDVLSSGEYNRLRLAIMCIDtql-eprSGILVLDEIDANLSGE 432 Helicobacter hep...
Feature 1                             #                                              
Q9K974      473 VAQAIAEKIRHISVGSQVLCISHLPQVAAMADTHLYISKKEVggRVTTEVralkd-eekveEIARMIAG 540 Bacillus halodurans
AAC06789    436 TSFKVAKFLKELSKKMQVIVITHSAPLCAAGDKNFKTEKKFLgdIPYIVVrelse-eekveEVARLMGM 503 Aquifex aeolicus VF5
NP_971907   474 VAVNVASHMKKLSKKKQILCITHLAVIASHADNHIKIEKNTIg-QTTKTSaaavsgkarleEIARMLAG 541 Treponema denticola ATCC 35405
YP_007676   467 TASIVGDKLKEIGKQHQVICITHFPQVASLADHHLQISKVEKdgRTLTQVqkldk-iscqqELARMAGQ 534 Parachlamydia sp. UWE25
NP_603175   473 TVRKIALKLKEIGDNTQIISITHSAVIASKASQQFYIEKYVEnsKTISRVkklsa-eerikEIGRMLVG 540 Fusobacterium nucleatum sub...
NP_893830   473 SLHSLVDLIKLTAQERQVLCITHQPFLAATGNTHFKVKKNVIngITFTSItklitkkerqnELIELIGG 541 Prochlorococcus marinus sub...
ZP_00370538 427 EAMSIAKVLDELSNFYQIFAISHLPQLSSKAHNHFLVEKNGKq-SYVKKLekee----rikELARMVSG 490 Campylobacter upsaliensis R...
ZP_00369068 426 EAMSIAEVLKELAKFYQIFAISHLPQLSSKASNHFLVEKIGNe-SRVRKIekee----rvrELARMVSG 489 Campylobacter lari RM2100
NP_907754   432 ESEGVARVLQELSRSYQILAISHQPHMPSYAHRHFLVKKEAKg-STIERLdreg----qilEIARIVSG 495 Wolinella succinogenes DSM ...
AAP77892    433 ESEGVAKILKTLSQSYQIFAISHQTHMPSLADNHYLVQKQGEk-SIVTKLdeeg----rvqEIARIISG 496 Helicobacter hepaticus ATCC...

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