Conserved Protein Domain Family
ABC_UvrA

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cd03238: ABC_UvrA 
ATP-binding cassette domain of the excision repair protein UvrA
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Statistics
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PSSM-Id: 213205
Aligned: 9 rows
Threshold Bit Score: 170.196
Created: 18-Nov-2004
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9Z985       6 VYVSGIKV--------------RNLKNVSIHFNSEEIVLLTGVSGSGKSSIAFDTlyaagrkryistlPTFFAttittlp 71   Chlamydophila pn...
Q9PK60    1478 DQIPKLSVsv----------ltSAIQIDNLSIPLRSLSTISGVSGSGKTTLLLEGiyksgcamlekdpSLFSE------- 1540 agent of mouse p...
AAP09473     1 MKVNQLIA--------------NNINKLDATIPFNKSFGIAGLSGSGKTTFCQTIgeeskk-rlvsllPKAEYqylfpni 65   Bacillus cereus ...
AAP09473   324 YTFYDLYC--------------RNIQIAEFQIPKNRLVTVTGESGCGKSTLVNEClat-------dflKRYPKd------ 376  Bacillus cereus ...
Q9Z985    1495 LSISKANHtrgsdrtlkvnlsiHHIQNLKVSAPLHALVAIGGVSGSGKTSLLLEGfkkqaelliakgtTTFSD------- 1567 Chlamydophila pn...
NP_281189    6 IEVRGAEE--------------HNLTDLDVELPRESLNVVTGLSGSGKSSLAFETiyaegqrryieslSAYARnflgqmd 71   Halobacterium sa...
NP_764262  373 YNIGPVTQ--------------NNLNNVKTSIPKHVLTVLTGVAGSGKSTLVKAGf------------ENNDH------- 419  Staphylococcus e...
NP_348092  461 LSLKDANL--------------HNLKNISVNIPIGVMTVVTGVAGSGKSTLISQVl------------PKFYPn------ 508  Clostridium acet...
P63380     627 LTVVGARE--------------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIlaavlanrlngarQVPGRhtrvtg- 691  Mycobacterium tu...
Q9Z985      72 npk---veeihglspTIAIKQnhfshyshatvgsttelfshlallftlegqardpktkevldlyskekvlstimelsegv 148  Chlamydophila pn...
Q9PK60    1541 ---------------IIFLDShpqpassrsdistyfdiapslrnffssltqakalnisasmfspntkqgqcsdcwglgyq 1605 agent of mouse p...
AAP09473    66 metnfsaikmeemplVLFLGKssissnprstigthtgvftevreklaevfnlspevfsfnnqlgwctgckgrgttkn--- 142  Bacillus cereus ...
AAP09473   377 --------------kLVMVGQdrnqsitsrstvatfldikkkltkyse-------------------------------- 410  Bacillus cereus ...
Q9Z985    1568 ---------------LVVIDShpiassqrsdistyfdiapslrafyasltqakalnisstmfstntkqgqcsdcqglgyq 1632 Chlamydophila pn...
NP_281189   72 kpq---vesveglspAISIDQknaannprstvgtvtelhdylrllyarvgtphcpecgrevgeqsaqqmvrrifdlpagt 148  Halobacterium sa...
NP_764262  420 ---------------TIFIDQkavqgsnrsnlltylgvfdsvrsyfsketglnkamfsynskgacpncggkgyiktel-- 482  Staphylococcus e...
NP_348092  509 ---------------TIFISQkpiqaskrsniatftgifngirelfskanhvktslfsfnsegacpnckglgvtytd--- 570  Clostridium acet...
P63380     692 ---------ldyldkLVRVDQspigrtprsnpatytgvfdkirtlfaatteakvrgyqpgrfsfnvkggrceactgdgti 762  Mycobacterium tu...
Q9Z985     149 qisilapllrkdiaaiheyaqqgftkvrcngtihpiysfltsgipedcsvdividtliksenniarlkvslftalefgeg 228  Chlamydophila pn...
Q9PK60    1606 l------------------------------------------------------------------------------- 1606 agent of mouse p...
AAP09473       --------------------------------------------------------------------------------      Bacillus cereus ...
AAP09473       --------------------------------------------------------------------------------      Bacillus cereus ...
Q9Z985    1633 w------------------------------------------------------------------------------- 1633 Chlamydophila pn...
NP_281189  149 kakllapvvrdqkgafedlfedlvnegysrvavdgesydlayddpdldenydhtvdvvvdrvtvtedarsritdsvetal 228  Halobacterium sa...
NP_764262      --------------------------------------------------------------------------------      Staphylococcus e...
NP_348092      --------------------------------------------------------------------------------      Clostridium acet...
P63380     763 k------------------------------------------------------------------------------- 763  Mycobacterium tu...
Q9Z985     229 hcsvlsdeelmtfstkqqiddvtytpltqqlfsphalesrcslc------------------------------------ 272  Chlamydophila pn...
Q9PK60         --------------------------------------------------------------------------------      agent of mouse p...
AAP09473       --------------------------------------------------------------------------------      Bacillus cereus ...
AAP09473       --------------------------------------------------------------------------------      Bacillus cereus ...
Q9Z985         --------------------------------------------------------------------------------      Chlamydophila pn...
NP_281189  229 deadgvlkvvvpdagpdtelggatarstgdladdaaddrlvvefsdalacthcgidiseietrsfsfnsphgacpecegi 308  Halobacterium sa...
NP_764262      --------------------------------------------------------------------------------      Staphylococcus e...
NP_348092      --------------------------------------------------------------------------------      Clostridium acet...
P63380         --------------------------------------------------------------------------------      Mycobacterium tu...
Q9Z985     273 qgsgifisidnpllidenlsikenccsfagncssylyhtiyqaladalnfnletpwkdlspeiqniflrgknnlvlpvrl 352  Chlamydophila pn...
Q9PK60         --------------------------------------------------------------------------------      agent of mouse p...
AAP09473       --------------------------------------------------------------------------------      Bacillus cereus ...
AAP09473       --------------------------------------------------------------------------------      Bacillus cereus ...
Q9Z985         --------------------------------------------------------------------------------      Chlamydophila pn...
NP_281189  309 gntkevsedlvvvdtskpikdvfeawsyqrsyyrtrldavaahfgvsvdtpfdelddavqqaflygtsdevvferstkng 388  Halobacterium sa...
NP_764262      --------------------------------------------------------------------------------      Staphylococcus e...
NP_348092      --------------------------------------------------------------------------------      Clostridium acet...
P63380         --------------------------------------------------------------------------------      Mycobacterium tu...
Q9Z985     353 fdqtlgkknltykvwrgvlndigdkvryttkpsrylskgmsahscslckgtglgdyasvatwegktftefqqmslnnwhv 432  Chlamydophila pn...
Q9PK60    1607 -------------------------------------------idrafyamekrscptcggfrvqplvqevvyegkhfgq 1643 agent of mouse p...
AAP09473   143 ----------------------------------------------veckkckgkryseeieqheidllakphsisnind 176  Bacillus cereus ...
AAP09473   411 ----------------------------------------------------------------------------didd 414  Bacillus cereus ...
Q9Z985    1634 -------------------------------------------idrafyalekrpcptcsgfriqplaqevlyegkhfge 1670 Chlamydophila pn...
NP_281189  389 trrkekrfegvipnlerryvetdsestrdhietymsvttcpacdgtrlkpssravlvdgtpitdvnrmsigdalahfegm 468  Halobacterium sa...
NP_764262  483 ----------------------------------------------afmgdfsqtcevchgkrykqevldatidgysiad 516  Staphylococcus e...
NP_348092  571 ----------------------------------------------lafmdtvittcevcqgrrftdeiltykfggknis 604  Clostridium acet...
P63380     764 -------------------------------------------iemnflpdvyvpcevcqgarynretlevhykgktvse 800  Mycobacterium tu...
Q9Z985     433 ffskvkspslsiqeilqglkqrLSFLIDLGLGYLTPNRALATLSGGEQERTAIAKHLGGel--fGITYILDEPSIGLHPQ 510  Chlamydophila pn...
Q9PK60    1644 llqsslnevakdfsflkkvqkpLQTLIANGLGYLPLGQNMSSLSLSEKIAIKITKYLFLpp-khPTLFLLDGVATSLDNQ 1722 agent of mouse p...
AAP09473   177 lsvesilslakelniseekqhiLQNIINMNIGYLTLNRIMGTLSGGELTRLYLAEFMAVs---eNAVIIIDEISVGLDHE 253  Bacillus cereus ...
AAP09473   415 ifersiediidelpnediaykrLSLLIKLGLGYLTLERKTQTLSTGEFQCVHLVSELFAntrnpHTLFIFDEPSKGLSQN 494  Bacillus cereus ...
Q9Z985    1671 llhtpietvalrfpfikkiqkpLKALLDIGLGYLPIGQKLSSLSVSEKTALKTAYFLYQtp-etPTLFLIDELFSSLDPI 1749 Chlamydophila pn...
NP_281189  469 eaeldardtkiaaeilkeirarLGFMTEVGLEYLTLDREASTLSGGESQRIRLATQIGSgl--vGVLYVLDEPSIGLHQR 546  Halobacterium sa...
NP_764262  517 vlnltvdegiiffdkkndikskLQSVSKTGLNYMSLGQPLSTLSGGEIQRVKLGQHLDEei--kNSIFIFDEPTTGLHES 594  Staphylococcus e...
NP_348092  605 evlnmtveealdffnekeicdiLKRLVDVGITYIKLGQSLNTLSGGELQRVKLASELESh----GNIYVLDEPTTGLHMS 680  Clostridium acet...
P63380     801 vldmsieeaaeffepiagvhryLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKrs-tgRTVYILDEPTTGLHFD 879  Mycobacterium tu...
Q9Z985     511 DTEKLIGVIKKLrd-qGNTVILVEHEERMISLADRIIDIGPGAGIFGGEVLFNG 563  Chlamydophila pneumoniae
Q9PK60    1723 QKYTLLSQLKTLvs-lGHTVVIIENHPAFSQYADFLIQMGHKTDKTSSRIIFSG 1775 agent of mouse pneumonitis
AAP09473   254 TLLQILEEIKRLg--cKNQIWLIDHSDTVLDTSDEQLFFGPGSGKYGGKIVEES 305  Bacillus cereus ATCC 14579
AAP09473   495 ILNQFIDSIRGIlqdeSVSIIMIEHNRYMLESSDYIVDFGKRQNESVEHLDVVN 548  Bacillus cereus ATCC 14579
Q9Z985    1750 KKQHLPEKLRSLin-sGHSVIYIDHDVKLLKSADYLIEIGPGSGKQGGKLLFSG 1802 Chlamydophila pneumoniae
NP_281189  547 DNDRLLNTLEELrd-lGNTLIVVEHDEETMRRADTVIDMGPGPGRHGGEVVANG 599  Halobacterium salinarum NRC-1
NP_764262  595 DIPILMECFDDLid-qNNTVILIEHNLSIMCEADWIIDVGPGPGLDGGKVQFSG 647  Staphylococcus epidermidis ATCC 12228
NP_348092  681 DISQLIKVINRIid-nGSTVIVIEHNLDVISQADWIIDLGPFAGQNGGEIMFEG 733  Clostridium acetobutylicum ATCC 824
P63380     880 DIRKLLNVINGLvd-kGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQG 932  Mycobacterium tuberculosis
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