1YQT


Conserved Protein Domain Family
ABC_RNaseL_inhibitor_domain2

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cd03237: ABC_RNaseL_inhibitor_domain2 
Click on image for an interactive view with Cn3D
The ATP-binding cassette domain 2 of RNase L inhibitor
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Statistics
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PSSM-Id: 213204
Aligned: 9 rows
Threshold Bit Score: 436.454
Created: 10-Dec-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site
  • Structure:Mg2+-ADP bound

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                       ## ###                                #       
1YQT_A    288 VTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPt--eGKIEWDl----tVAYKPQYIKADYE 361 Pyrococcus furiosus
NP_281170 355 YPDMTKSYGDGEFTLSVEGGDINRNEVLGVVGPNGIGKSTFAQLLAGGLEPssvgGEAGAAldvgldIAYKPQYVEADQQ 434 Halobacterium sali...
AAV46954  360 YPELQKSYGDGEFSLDVEAGTIRESEVLGVVGPNGIGKSTFAKMLAGRLEPt--aGEIDTSl----dIAYKPQYIEIDQP 433 Haloarcula marismo...
NP_618095 337 SFNSFSKQYGDGFSLKATGGSLREGEVLGIVGPNGIGKSTFVKVLAGEIKPd--eGDPGIEv----kISYKPQYIKADTP 410 Methanosarcina ace...
Q58129    349 LSYSSMKKTLGDFKLEVSGGTIYKGEVIGILGPNGIGKTTFVKLLAGVIKPd--eGEVIKEgd--ikVSYKPQYITPDYD 424 Methanocaldococcus...
EAA16043  365 YTYPKIVKTLNSFTLTIDKGNFSESEIFVLLGQNGSGKSTFIRLFAGLIKPd--nVDSLSFles-lsVSYKPQQIQAKFT 441 Plasmodium yoelii ...
CAE75081  357 IKYPAMSKTLGDFHLNVEAGDFSDSEIIVMLGENGTGKTTMIRMMAGSLKPe--dEDTELPrv---tISYKPQKISPKSE 431 Caenorhabditis bri...
CAF92703  370 YQYPEMKKTMGEFTLEIKEGEFTDSEIVVMLGENGTGKTTFIRMLAGSLKPde-gGDIPILn-----VSFKPQTISPKFK 443 Tetraodon nigrovir...
XP_464961 353 YRYPTMTKTRCGFKLSVTEGSFNDSQIIVMLGENGTGKTTFIRMLAGRVKPdk-vGDEEVDvpe-ytVSYKPQELISKYS 430 Japanese rice
Feature 1                                                                     ##              
1YQT_A    362 GTVYELLskidasklnsnfyktellkPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 441 Pyrococcus furiosus
NP_281170 435 MRVDAFLssvtddvgt-sywqteiadPLQLDPIMEQRLPDLSGGERQRVAIAATLSKDADLYLLDEPSAHLDVEQRVLAT 513 Halobacterium sali...
AAV46954  434 MRVDAFLasitddfgs-sywnteiaqPLQLESVMEQQLTDLSGGERQRVAIAACLSKDADLYLLDEPSAHLDVEQRVMAT 512 Haloarcula marismo...
NP_618095 411 VSVQDFLrgitkrfgt-syyeveianPLQLERIYESLLTELSGGELQRVAIAACLSQEADLYILDEPSAHLDVEQRSMVT 489 Methanosarcina ace...
Q58129    425 GTVEDLLssitnihts--yykseiinPLQLEKLLDREVRELSGGELQRVAIAACLSRDADIYLLDEPSAFLDVEQRLRVS 502 Methanocaldococcus...
EAA16043  442 GTVRQLLmsklkglytdpyfnneiikPLKIDGILDNQVLTLSGGELQKVAIIITLAKNTNIYLIDEPSAYLDSEQRIIVS 521 Plasmodium yoelii ...
CAE75081  432 TTVRYMLhdkiqnmyehpqfktdvmnPLMMEQLLDRNVNELSGGELQRTALALCLGKTASLYLIDEPSAYLDSEQRLHAA 511 Caenorhabditis bri...
CAF92703  444 GTVRALLyekirdayihpqfitdvmkPMQIESIIDQEVPNLSGGELQRVALTLCLGKPADVYLIDEPSAYLDSEQRLMAA 523 Tetraodon nigrovir...
XP_464961 431 STVRDLLfekvpgsctqaqfrsdvmkPLKIEQLMDRQVPTLSGGELQRVALCLCLGKPADIYLIDEPSAHLDSEQRLLAA 510 Japanese rice
Feature 1                       #                                                             
1YQT_A    442 RAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEGEPGKYGRALPPXGXREGXNRFLASIGITFRRDPDTGRPRANKEG 521 Pyrococcus furiosus
NP_281170 514 RAIRRFAENNESTVMVIDHDIYMIDLVSDRLMVFDGEPAEHGQASPPQAMRSGMNEFLANLDVTFRRDERLGRPRINKPD 593 Halobacterium sali...
AAV46954  513 SAIRRYAENHDATAMVIDHDIYMIDLLADRLLVFDGEPAKNGHAAPPQGMREGMNEFLQNLDITFRRDERTSRPRINKPD 592 Haloarcula marismo...
NP_618095 490 KVINRFAENNQKTAMVVDHDIYMIDMLSQRLLVFEGKPSVYGEAHGPFSMESGMNRFLENLGITFRRDEETRRPRVNNLG 569 Methanosarcina ace...
Q58129    503 KVIRRIADEKEAGMFVVDHDILFQDYISDRFIVFSGEPGKFGVGSSPMNKRDGANKFLKEMQITFRRDPETGRPRANKEG 582 Methanocaldococcus...
EAA16043  522 KIIKRFILNTNKTAFVVEHDFIMATYLADHVIVFDGQAGVNTVANTPQTLVAGMNKFLKIIDVTFRRDPTNYRPRINKYD 601 Plasmodium yoelii ...
CAE75081  512 KVIKRFIMHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTTACKPQSLLEGMNRFLKMLDITFRRDQETYRPRINKFE 591 Caenorhabditis bri...
CAF92703  524 RVIKRYILHAKKTAFVVEHDFIMATYLADRVIVFDGIPSKQTLANTPQSLLAGMNRFLALLGITFRRDPNNFRPRINKLN 603 Tetraodon nigrovir...
XP_464961 511 KVIKRFILHEKKTAFVVEHDFIMATYLADKVVVFEGKPSVDCIANAPEPLASGMNRFLSHLDVTFRKDPTTYRPRINKLG 590 Japanese rice
Feature 1                
1YQT_A    522 SVKDREQKEKG 532 Pyrococcus furiosus
NP_281170 594 SQLDKQQKRDG 604 Halobacterium salinarum NRC-1
AAV46954  593 SQLDREQKNAG 603 Haloarcula marismortui ATCC 43049
NP_618095 570 SRLDREQKESG 580 Methanosarcina acetivorans C2A
Q58129    583 SQRDIMQKEKG 593 Methanocaldococcus jannaschii
EAA16043  602 SVKDKEQKLNG 612 Plasmodium yoelii yoelii
CAE75081  592 SVKDVEQKKSG 602 Caenorhabditis briggsae
CAF92703  604 SIKDTEQKKSG 614 Tetraodon nigroviridis
XP_464961 591 SIKDAEQKAAG 601 Japanese rice

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