1YQT


Conserved Protein Domain Family
ABC_RNaseL_inhibitor_domain1

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cd03236: ABC_RNaseL_inhibitor_domain1 
Click on image for an interactive view with Cn3D
The ATP-binding cassette domain 1 of RNase L inhibitor.
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Statistics
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PSSM-Id: 213203
Aligned: 10 rows
Threshold Bit Score: 431.791
Created: 25-Aug-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site
  • Structure:Mg2+-ADP bound

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            ## ###                                       
1YQT_A         22 QLEEDCVHRYGVNAFVLYRLPVVKEgxVVGIVGPNGTGKSTAVKILAGQLIPNLc--GDNDSWDGVIRAFRGNELQNYFE 99  Pyrococcus fur...
XP_464961      82 DLDKETTHRYGPNSFKLHRLPVPRPgqVLGLVGTNGIGKSTALKILAGKVKPNLgkfTDPPNWDEIMRNFRGSELQKYFT 161 Oryza sativa (...
EAA16043       92 DINKDVVHRYGPNTFKLHRLPVPKLgqILGLVGTNGIGKSTALKILSSKLKPNLgkfDNPPEWRDILSFFRGSELQIFFT 171 Plasmodium yoe...
Q58129         86 LSEDKIVHSYGQNRFKLFGLVIPRDg-VVGIIGQNGIGKSTVLRILAGELIPNLgkhDKEPNYDDVIKYFRGTELQEYFE 164 Methanocaldoco...
NP_142789      74 QLEEDCVHRYGVNAFVLYRLPVVKDgmVVGIVGPNGTGKTTAVKILAGQLIPNLc--CDNDSWDDVIKAFRGSELQNYFE 151 Pyrococcus hor...
CAE75081       89 NLANETTHRYSQNSFKLHRLPTPRCgeVLGLVGTNGIGKSTALKILAGKQKPNLgnfQKEQEWTTIINHFRGSELQNYFT 168 Caenorhabditis...
NP_281170      84 ELDDQPTHRYGENSFSLYGLPVPESgkVTGLLGPNGIGKSTAVDLLAGEVTPNLgrhESPPDWDEVVDEYRGTELQDYLA 163 Halobacterium ...
NP_618095      71 EALQEPTHRYGPNGFALFGLPVPRIgkVTGILGPNGIGKSTSVQILSGTLVPNFg--QGKGDWDTVLEHYAGTALHDYFK 148 Methanosarcina...
CAF92703       78 NLEKETTHRYGANSFKLHRLPIPRPggVLGLVGTNGIGKSTALKILAGKQKPNLgkyDSPPDWQEILTYFRGSELQNYFT 157 Tetraodon nigr...
vng:rrnAC2103  89 ELTDEPVHRYGENAFALYGLPSPAEgqVTGILGPNGIGKTTAVRILADEMQPNLgryGEEPSWDEILDEYRGTALQEYLE 168 Haloarcula mar...
Feature 1                      #                                                                  
1YQT_A        100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRn-AT 178 Pyrococcus fur...
XP_464961     162 RLLEDKMKATMKPQYLDHIPKSVTGKVGDLLSKKDERHMKNLLCDTLELNQVLDRDVSALSGGELQRFAIAARAMEe-AD 240 Oryza sativa (...
EAA16043      172 KLLEEQLSPIIKPQNVDLIPKQVKGNILEIINKKDKLNQKDKYMKVLELDHLLDRNVEDLSGGELQRFALLISIIGqtTN 251 Plasmodium yoe...
Q58129        165 KLKNKGVKAIHKVQYVDILPKVVKGKVGDLLKKVDEKGKFDEVVEKLELKNILDRELSQLSGGELQRVAIAAAYLRn-GD 243 Methanocaldoco...
NP_142789     152 KLKNGEIKPVVKPQYVDLLPKAVKGKVGELLKKVDETGKFEEIVKVLELEKVLEREIDQLSGGELQRVAIAAAILRk-AH 230 Pyrococcus hor...
CAE75081      169 RILEDTLKCVIKPQYVDQIPRAAKGTVELNLKRKHDNENLETVIDQMELRGLLNRNIDQLSGGELQRFAIAMCCVQk-AD 247 Caenorhabditis...
NP_281170     164 AVRDGDVDVAKKPQYVDEIPAQFDGNTRQLLEATDERGVLDDLVDRLSIRPVMDQAIDSLSGGELQRVALAATLARd-AD 242 Halobacterium ...
NP_618095     149 DVVDGKVKVSQKPQYVDLIPKAFKGKTSELLEKTDERGFLDELIDRLDLRGVVERKISELSGGELQRVAIAACAARd-AQ 227 Methanosarcina...
CAF92703      158 KILEDDLRAIVKPQYVDQIPKTVKGSVGAILTRKDDTDTQDIICQQLDLTHLRERNVENLSGGELQRFACAVVCIQk-AD 236 Tetraodon nigr...
vng:rrnAC2103 169 QMRGGDVDVARKPQYVDRIPNQFDGKAIELLDQTDERGALDYLVEQTGIEPVVDNHIDDLSGGELQRVALVATLARd-AD 247 Haloarcula mar...
Feature 1             ##                                #                                         
1YQT_A        179 FYFFDEPSSYLDIRQRLNAARAIRRLSeeg-ksVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN-------- 249 Pyrococcus fur...
XP_464961     241 VYMFDEPSCYLDVKQRLKAAQVIRSLLqpk-nyVIVVEHDLSILDYLSDYICCLYGTPGAYGVVTLPSSVRE-------- 311 Oryza sativa (...
EAA16043      252 VYMFDEPSSYLDIKQRISMAKIIHGLVrhd-nyIIVVEHDLSILDYLSDYVCCLWGKAGAYGVVTSPFSVRE-------- 322 Plasmodium yoe...
Q58129        244 IYFFDEPSSWLDIRQRFNAARLIRELNk-----VVVVEHDLIVLDYLSDYIHIMYGVPSAYGIVSMPKSVRV-------- 310 Methanocaldoco...
NP_142789     231 FYFFDEPSSYLDIRQRLNVARVIRRLAdeg-kaVLVVEHDLAVLDYLSDIVHIVYGEPGVYGIFSQPKGTRN-------- 301 Pyrococcus hor...
CAE75081      248 VYMFDEPSSYLDVKQRLKAAAIIRERIsdt-nyVVVVEHDLAVLDYLSDFICCLYGVPGVYGVVTLPSGVRE-------- 318 Caenorhabditis...
NP_281170     243 FYFVDELTPYLDIGQRVTAARLVRELAedadkaVLVVEHDLAVLDMLADSIHVAYGEPSVYGVVTPPKSVRN-------- 314 Halobacterium ...
NP_618095     228 FYFFDEISPYLDIYQRINVARLVQEISkd--raVLVVEHDLAILDMLTDVIHIAYGEPAGFGVITLPKSVRV-------- 297 Methanosarcina...
CAF92703      237 IFMFDEPSSYLDVKQRLKAAITIRSLItpd-ryIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFGVREgrtqsfqg 315 Tetraodon nigr...
vng:rrnAC2103 248 FYFLDEITPYLDIGQRMTAARLIRELAeeedrsMLVVEHDLAILDLLADNINVAYGTPGAFGVITPPKSTKK-------- 319 Haloarcula mar...
Feature 1                                                
1YQT_A        250 --------------GINEFLRGYLKDENVRFRPYEIKFT 274 Pyrococcus furiosus
XP_464961     312 --------------GINIFLDGFIPTENLRFREEKLTFR 336 Oryza sativa (japonica cultivar-group)
EAA16043      323 --------------GINVFLDGFIPTDNLRIREESLNFK 347 Plasmodium yoelii yoelii
Q58129        311 --------------GINEYLYGELREENIRFRKEPIIFE 335 Methanocaldococcus jannaschii
NP_142789     302 --------------GINEFLQGYLKDENVRFRPYEIKFT 326 Pyrococcus horikoshii OT3
CAE75081      319 --------------GINMFLDGFIRTENMRFRESKLSFK 343 Caenorhabditis briggsae
NP_281170     315 --------------GINEYLRGYLENENMRVRPEAIEFE 339 Halobacterium sp. NRC-1
NP_618095     298 --------------GINQYLKGYLPEENIRIRPEAIRFE 322 Methanosarcina acetivorans C2A
CAF92703      316 wgigqqldhtslipGINIFLDGYIPTENLRFRETSLVFK 354 Tetraodon nigroviridis
vng:rrnAC2103 320 --------------GINEYLSGYLENENMRIRQTDIEFE 344 Haloarcula marismortui ATCC 43049

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