1VPL,1SGW


Conserved Protein Domain Family
ABC_DR_subfamily_A

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cd03230: ABC_DR_subfamily_A 
Click on image for an interactive view with Cn3D
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Statistics
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PSSM-Id: 213197
Aligned: 224 rows
Threshold Bit Score: 135.988
Created: 13-Dec-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                               ## ###                                   
1VPL_A        16 VVVKDLRKRIgkk----eiLKGISFEIEegeIFGLIGPNGAGKTTTLRIISTlikPSSGIVTVFGknvveephevrklIS 91   Thermotoga mar...
NP_608444    541 LKIKKLCKRFatnd--rpaLNLFSWNVYeneVTVLMGHNGCGKSTLLKILAGlvePSRGTVMISShniqterkaasmeLG 618  fruit fly
1SGW_A        11 LEIRDLSVGYdk-----pvLERITMTIEkgnVVNFHGPNGIGKTTLLKTISTylkPLKGEIIYNGvpitk----vkgkIF 81   Pyrococcus fur...
NP_788912   1249 LHVEHLSVFFglk----aaIKHIDFMVNryqVMSVFGANGTGKSVLLKTILGiytPSSGRIISSKtvpf-----kskdLD 1319 fruit fly
P05529         6 LEINSLSFSYkvnl--ppvFNNLSLKIEqgeLIGLLGENPAGKTTLFNLIRGgvsNYEGTLKRNFsg---------geLV 74   Escherichia coli
BAD72772       4 LDIQNLNFKYgkd----yvLKNINLTLEqgdILGLVGENGAGKSTLMKLISGiipNYEGDIKIQAh-----------nVG 68   Streptococcus ...
CAB15023       2 IELRQLSKAIdgn----qvLKDVSLTIEkgeIFGLLGRNGSGKTTMLRLIQQiifADSGTILFDGveikkhpkvkqniIY 77   Bacillus subti...
YP_147474      2 IQLVDVTKTFdrf----aaVKGANMMVPkgaIYGLLGPNGAGKTTLLKMMAGilrQDRGTITVDGedvwen-vrvkqrLL 76   Geobacillus ka...
ZP_00387094    2 IEIDALSKDYgqt----eaIKNLNLTIEedrVFGLIGTNGAGKSTLLRMIAGilrPTSGHITIDGlpvydn-paakkkFC 76   Lactobacillus ...
NP_972715      2 LKVQNLSKYYgskktqvvgCKNISFELKtgeITSLLGLNGAGKSSIINCISGyytPDEGDAFIDSysiltdgleakklLG 81   Treponema dent...
Feature 1           #                                                                            
1VPL_A        92 YLPEeaga---yrnMQGIEYLRfvagfyasssseieemve---rateiaglgekikdrvstYSKGMVRKLLIARALMVn- 164  Thermotoga mar...
NP_608444    619 IAFGhdml---ltgFTVIDYLRficrvkglhnnieidgqsn--yflnvlqigglktkrirtLTDRDLCLVSICCAFVGn- 692  fruit fly
1SGW_A        82 FLPEeiiv---prkISVEDYLKavaslygvkvnkneimd------alesvevldlkkklgeLSQGTIRRVQLASTLLVn- 151  Pyrococcus fur...
NP_788912   1320 SCHMvgysaqefqtMQLMTILEtwdlilrirrskqisfraeatklckifglykyrfnslsiCSQGVLKRLSLGIALMSd- 1398 fruit fly
P05529        75 SLPQvinl---sgtLRNEEVLDliccfnkltkkqawtdvnhkwndnffirydkirrkrtytVSYGEKRWLIISLMVTLck 151  Escherichia coli
BAD72772      69 TLIEhpsl---yadMTVLSNLKfycrlfgksygviddy-------kyvlqvdsylhkkvskLSLGMKQRVGLFIALIAs- 137  Streptococcus ...
CAB15023      78 MPVQnpf----ydkYTYKQLVDilrriypkfdvtyane--------lmnryeipetkkyreLSTGLKKQLSLVLSFAAr- 144  Bacillus subti...
YP_147474     77 FLPDfvyf---fphATIRQMADfyeqlypsfsrgrfle--------lqsvfaldpnkkiqqFSKGMQRQAAFWLAFSVr- 144  Geobacillus ka...
ZP_00387094   77 FIPDdpyf---fpnATAESMARdyaavyqefdqerfar--------lladfrlepkrrihdYSKGMKRQLAILLGLCTn- 144  Lactobacillus ...
NP_972715     82 ILYEqnpl---ysnMTVHDFLYfagqmhgiekdrldaald---evidfceidevknhliksLSKGFKQRVGLAQAVLHn- 154  Treponema dent...
Feature 1               ##                                 #                     
1VPL_A       165 -PRLAILDEPTSGLDvln-areVRKILKQAsqe-gltILVSSHNMLEVef-lCDRIALIHnGTI 224  Thermotoga maritima MSB8
NP_608444    693 -SPIILIDDVHSDLDkrt-qslVWNLINEEksk--rtIILVSNSPALAen-iADRMAIMSnGEL 751  fruit fly
1SGW_A       152 -AEIYVLDDPVVAIDedskhkvLKSILEILkek--giVIISSREELSY----CDVNENLHkYST 208  Pyrococcus furiosus DSM 3638
NP_788912   1399 -AELILLDDPFTHLDivs-qrsMLHIIHDLrrr--ghSIIYTCSDTAYst-pALRMATLSyPGI 1457 fruit fly
P05529       152 nARLFLLDEPTVGIDiqy-rmmLWELINKItad-gktVFFSTHIFDELtrdkIPFYMLSKnSIN 213  Escherichia coli
BAD72772     138 -EEFILLDEPTNGLDpig-iknLLDLIKKLssekgitFIISSHILQNLeq-iCNKAVLLRnHTI 198  Streptococcus mutans
CAB15023     145 -PALILLDEPTDGIDavt-rhdVLQLMVDEvaerdtsILITSHRLEDIer-mCNRIGFLEdNSL 205  Bacillus subtilis subsp. subti...
YP_147474    145 -PDVLIMDEPLDGLDvfv-rrhVKQLLIEEvaeremtVVISSHNLRELed-lCDIVGLMAqGTV 205  Geobacillus kaustophilus HTA426
ZP_00387094  145 -TKYLLLDEVFDGLDpvm-rqsMKSLFAEDmdrrqltPIIASHNLRELed-iCDHIGFLHsGGL 205  Lactobacillus delbrueckii subs...
NP_972715    155 -PPLIILDEPASGFDsvq-vkdFEKKILHIake--ktILICTHDLRQAae-lCSNHILLNkGEI 213  Treponema denticola ATCC 35405

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