Conserved Protein Domain Family
ABC_cobalt_CbiO_domain2

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cd03226: ABC_cobalt_CbiO_domain2 
Second domain of the ATP-binding cassette component of cobalt transport system
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Statistics
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PSSM-Id: 213193
Aligned: 19 rows
Threshold Bit Score: 241.777
Created: 9-Dec-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                     ## ###                                      
YP_037428             294 SAEHISFQyeknspliLRDLTVSIEKGEWVALVGKNGTGKSTLLTLLAGLqka-rrGKVKWngkvihkidskerfksIGY 372 Bacill...
NP_275597             273 RVMNISHTqgd---frLDGVNLDLWRGEVLGLTGPNGSGKTTLARLIVGLiep-emGEIRVeg-------------tAGL 335 Methan...
AAN24513              298 GTHNLTIGykgkdgftRAIPDLRFRAGEITGLMGNNGCGKTTLVRTLTGLikp-vsGRIELngvpakp---rdltraGFL 373 Bifido...
ZP_00120393           298 GTHNLTIGykgkdgftRAIPDLRFRAGEITGLMGNNGCGKTTLVRTLTGLikp-vsGRIELngvpakp---rdltraGFL 373 Bifido...
REF_nestle:BL0693     298 GTHNLTIGykgkdgftRAIPDLRFRAGEITGLMGNNGCGKTTLVRTLTGLikp-vsGRIELngvpakp---rdltraGFL 373 Bifido...
REF_goetting:CTC00753 187 EIEKLNFEyerg-ykiLKDLSFKLHRGEIMTVMGENGAGKSTLFKIIAGMidk-ykGKVLIdnknikslklkerikkIGY 264 Clostr...
REF_CBCUMN:MAP3731c   282 RGIRCCFRgh----rvLDIEEARFPAATVTAITGPNGAGKSTLARVLVGLqr--hdGEVSFggsrisr---srrqrmSAI 352 Mycoba...
NP_971516             268 TLHDIHFGyrkn-tevLKGIHLSIYPGDKIALIGKNGCGKTTLGKILCGLkke-qsGTVLLdgrsfpa---rvrsktAGY 342 Trepon...
NP_972759             279 SLSDISFSfkdg-teiLNSVNLDLYKNDIAALTGKNGAGKTTLAKIISGIyrq-saGSIKFgekilne---kervsrTNF 353 Trepon...
YP_056750             305 TIEHLAFSyrpg-stiLDIDSLFLPGGAVTILTGPNGAGKSTLARIVCGLekspteARIVMgvpwtp----grrqkcCGM 379 Propio...
Feature 1                   #                                                                          ## 
YP_037428             373 VSQHPYYHFTFDTVWDEvyerarelygeqgkeiaehqlkkfwLYGLKERHPHDCSGGEQQLLALCTTLLSKPTLLLLDEP 452 Bacill...
NP_275597             336 VMQDPDHQLFMDTVKREitfglddysdg----dvedlletmkLHQLMERHPHSLSGGEKQRTLISVYLFRKPDLIIMDEP 411 Methan...
AAN24513              374 VMQDVNYQLFSDSVREElligldetdagi-taqanqvmadldLAAFVERHPMSLSGGQKQRVAIGSALMCGKDLIILDEP 452 Bifido...
ZP_00120393           374 VMQDVNYQLFSDSVREElligldetdagi-taqanqvmadldLAAFVERHPMSLSGGQKQRVAIGSALMCGKDLIILDEP 452 Bifido...
REF_nestle:BL0693     374 VMQDVNYQLFSDSVREElligldetdagi-taqanqvmadldLAAFVERHPMSLSGGQKQRVAIGSALMCGKDLIILDEP 452 Bifido...
REF_goetting:CTC00753 265 LSQNPNDYFGRKTVFEEvgytlknigeyk-eekveqvmkllnISYLEDKNPRDLSGGEKQRVAIACTIITDPEILILDEP 343 Clostr...
REF_CBCUMN:MAP3731c   353 VMQDVQRQLFTESVRAElrlgappaaag----vastllrdlgLEEFADRHPLSLSGGQQQRLVVAAARLSNRKIMVFDEP 428 Mycoba...
NP_971516             343 VMQNVDFQLFGCSVYDDlllgnealpdke--nriqtvleklsLSALQEQHPTTLSMGQKQRLVVAASFLQNKRLTIFDEP 420 Trepon...
NP_972759             354 VLQDVEYQLFGADVFSEllignkqlenvn--ekiekalkklnLYDYKDEHPFSLSMGQKQRLIIAATYVRGCPLTILDEP 431 Trepon...
YP_056750             380 VMQDVRRQLFSESVEREvtlgldlphrda--advsgllkrldLAGEHDRHPLSLSGGQAQRLVVAATIAQDKEVVIFDEP 457 Propio...
Feature 1                                               #                     
YP_037428             453 TKGLDPWKKERVGELFRKLqKEGTTIVMATHDIEFAAKYVDQCMMLFDGAVI 504 Bacillus thuringiensis serovar kon...
NP_275597             412 TTGMDLDNMKRLAGWIGKLkGMGVAMILISHDLEFLQMVADRTIMMDNGALV 463 Methanothermobacter thermautotroph...
AAN24513              453 TSGLDRYHMEQVGELLRQLaSQGKAILVVTHDEELAAGWCDRIVNLGADDSG 504 Bifidobacterium longum NCC2705
ZP_00120393           453 TSGLDRYHMEQVGELLRQLaSQGKAILVVTHDEELAAGWCDRIVNLGADDSG 504 Bifidobacterium longum DJO10A
REF_nestle:BL0693     453 TSGLDRYHMEQVGELLRQLaSQGKAILVVTHDEELAAGWCDRIVNLGADDSG 504 Bifidobacterium longum NCC2705
REF_goetting:CTC00753 344 TRGMDAEAKENLGEIIKTLaEVGKSIVVITHDSDFAGDYSHSVMLMFNGEIV 395 Clostridium tetani E88
REF_CBCUMN:MAP3731c   429 SSGVDRRHLRSITNVMRDVaAQGVVVILISHDQELLTLAADQELRMRVADTL 480 Mycobacterium avium subsp. paratub...
NP_971516             421 TSGLDYGSMQNVCALIDSItGKTNASVIITHDYEFILNTCNRAVLLEDGQIK 472 Treponema denticola ATCC 35405
NP_972759             432 TSGLDYGNMVRVGELIEEI-AETSAVLIITHDFEFISKICNRLILLKDKKIA 482 Treponema denticola ATCC 35405
YP_056750             458 TSGVDRRHLASIADLVGELaTAGKVVIVITHDPELMARCGDFLVNIATLKGK 509 Propionibacterium acnes KPA171202

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