1YQT,1YQT


Conserved Protein Domain Family
ABC_RNaseL_inhibitor

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cd03222: ABC_RNaseL_inhibitor 
Click on image for an interactive view with Cn3D
ATP-binding cassette domain of RNase L inhibitor
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Statistics
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PSSM-Id: 213189
Aligned: 3 rows
Threshold Bit Score: 255.96
Created: 25-Aug-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site
  • Structure:Mg2+-ADP bound

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                        ## ###                                       
1YQT_A    288 VTYPRLVKDYgs-frLEVEPGEIKKgeVIGIVGPNGIGKTTFVKXLAGVEEPt--eGKIEWdl----------------- 347 Pyrococcus furiosus
1YQT_A     22 QLEEDCVHRYgvnafVLYRLPVVKEgxVVGIVGPNGTGKSTAVKILAGQLIPnlcgDNDSWdgvirafrgnelqnyfekl 101 Pyrococcus furiosus
CAE75081  357 IKYPAMSKTLgd-fhLNVEAGDFSDseIIVMLGENGTGKTTMIRMMAGSLKPe--dEDTELpr----------------- 416 Caenorhabditis bri...
Feature 1                #                                                                    
1YQT_A    348 -----tVAYKPQYIKadyegtvyellskidasklnsnfyktellkplgiidlydrevneLSGGELQRVAIAATLLRdADI 422 Pyrococcus furiosus
1YQT_A    102 kngeirPVVKPQYVDlipkavkgkviellkkadetg--kleevvkalelenvlereiqhLSGGELQRVAIAAALLRnATF 179 Pyrococcus furiosus
CAE75081  417 ----vtISYKPQKISpksettvrymlhdkiqnmyehpqfktdvmnplmmeqlldrnvneLSGGELQRTALALCLGKtASL 492 Caenorhabditis bri...
Feature 1        ##                                #                                          
1YQT_A    423 YLLDEPSAYLDVEQRLAVSRAIRHLXeknektALVVEHDVLXIDYVSDRLXVFEGEPGKYGRALPPXGXREGXNRFLASI 502 Pyrococcus furiosus
1YQT_A    180 YFFDEPSSYLDIRQRLNAARAIRRLSeeg-ksVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGY 258 Pyrococcus furiosus
CAE75081  493 YLIDEPSAYLDSEQRLHAAKVIKRFImhakktAFVVEHDFIMATYLADRVIVFEGQPSVNTTACKPQSLLEGMNRFLKML 572 Caenorhabditis bri...
Feature 1          
1YQT_A    503 GITFR 507 Pyrococcus furiosus
1YQT_A    259 LKDEN 263 Pyrococcus furiosus
CAE75081  573 DITFR 577 Caenorhabditis briggsae

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