1RK4,2AHE,1K0N,2D2Z,2R4V,2YV7,2YV9,3FY7


Conserved Protein Domain Family
GST_C_CLIC

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cd03198: GST_C_CLIC 
Click on image for an interactive view with Cn3D
C-terminal, alpha helical domain of Chloride Intracellular Channels
Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLICs (CLIC1-6 in vertebrates), p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. Biochemical studies of the Caenorhabditis elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. CLICs display structural plasticity, with CLIC1 adopting two soluble conformations. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLIC1 dimer bears no similarity to GST dimers. The redox-controlled structural rearrangement exposes a large hydrophobic surface, which is masked by dimerization in vitro. In vivo, this surface may represent the docking interface of CLIC1 in its membrane-bound state. The two cysteines in CLIC1 that form the disulfide bond in oxidizing conditions are essential for dimerization and chloride channel activity, however, in other subfamily members, the second cysteine is not conserved.
Statistics
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PSSM-Id: 198307
Aligned: 26 rows
Threshold Bit Score: 164.704
Created: 4-Nov-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
N-terminal
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:N-terminal domain interface [polypeptide binding site]
Evidence:
  • Structure:2AHE; Human CLIC4; contacts at 3.5A between N- and C-terminal domains
  • Structure:1K0N; Human CLIC1; contacts at 3.5A between N- and C-terminal domains

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1RK4_B       102 NPESNTAGLDIFAKFSAYIknsnp---------------alndNLEKGLLKALKVLDNYLTSplpeevdetsaedegvSQ 166 human
2AHE_A       111 HPESNTAGMDIFAKFSAYIknsrp---------------eaneALERGLLKTLQKLDEYLNSplpdeidensmedikfST 175 human
2YV7_A       118 DKEVATLIENLYVKLKLMLvkk-------------------deAKNNALLSHLRKINDHLSA----------------RN 162 fruit fly
2YV9_A       116 DPSAEKRIENLYRNFKLFLrakvefdkgkkepsrvedlpaqikVHYNRVCEQLSNIDQLLSE----------------RK 179 nematode
AAH93565     116 VLHAEKVCEDLYKNFMNYVr----------------------nNMSRPLLTTLSNLDTYLAS----------------QK 157 African clawed ...
AAP06293     117 VRAAEKNFEDLYSSLMQYIk----------------------nDTKKPLCSVLSNLNAYLAS----------------AA 158 Schistosoma jap...
XP_002113010  91 DENCKSAGAAIFGKFAALMknkds---------------aldgSLRQKLLDELRNFNEFLSS----------------RS 139 Trichoplax adha...
XP_002166880  99 DHGASKAGEKIFQKFSALIrnrdp---------------ageeRLRDSLNEELQKLDAFLASsk-------------kIP 150 green hydra
EFX90323     111 DKDVATRIENVYSKFKLMLlkk-------------------eeASKNALLSQLSKIDEHLGK----------------RG 155 common water flea
EFX88801     104 NPKADSAIKNVFSRFCFYIkq--------------------isKDSTHLENELQVLNTFLGQ----------------RG 147 common water flea
Feature 1                     ##  #   #                               ##  ##    #      
1RK4_B       167 RKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCPDDEEIELAYE 236 human
2AHE_A       176 RKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIAYS 245 human
2YV7_A       163 TRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTALWRYMYHMYQLDAFTQSCPADQDIINHYK 232 fruit fly
2YV9_A       180 SRYLLGNSMTEYDCELMPRLHHIRIIGLSLLGFDIPHNFTHLWAYILTAYRTAAFIESCPADQDIIHHYK 249 nematode
AAH93565     158 GVYLLGDDLSYVDCQLMPRLQHIRVAGRAYKKFDIPDDLCHLWQYIKQMYTTDSFTYSCPCDRDILMHYE 227 African clawed frog
AAP06293     159 KPYAMGDEISYVDCQLAPKLQHVRVAGRAYKNFDIPHDMKHIWTYIQNIYKLKSFISSCPTTRDILMHYD 228 Schistosoma japonicum
XP_002113010 140 NRFISGDSLTHPDCSLLPKLYHVRVAGKHFKHFDIPKDFAKLLEYLKAGFETEAFKKTVYLEDEVIAGWQ 209 Trichoplax adhaerens
XP_002166880 151 GPYLAGNEMTMSDCVLLPKLHQMQITLKFFNDFSIPKNLVYLQNYLKVANENEVFVKTCCETSEILEGWS 220 green hydra
EFX90323     156 NRFLTGDTLCCFDCELMPRLQHIRVAGKYFMEFDIPTDLANLWRYMHHMYHLDAFTQSCPADQDIINHYK 225 common water flea
EFX88801     148 SIFLCGNNLTHLDCEFLPKLQHIRVASAALKNFFIPISLTHIWAYLFAAYNADVFVQTCPSDQEIVLHWL 217 common water flea

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