Conserved Protein Domain Family
TM4SF3_like_LEL

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cd03154: TM4SF3_like_LEL 
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Statistics
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PSSM-Id: 239407
Aligned: 10 rows
Threshold Bit Score: 117.139
Created: 7-Nov-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
dimer interface
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:dimeric assembly observed in the crystal is predicted to resemble quaternary structure of intact CD81 at the cell surface

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #    #   # ##  #                 #  ##  ##                                 
BAD96742     106 GAVFKSKSDRIVNETLYENTKLLSATges---ekqFQEAIIVFQEEFKCCGLVNGAADWgnn---fqhYPELCACLdkqr 179 human
AAX61163      96 GIAGAVSQNKMEDWVNEQLKTMLPFAkqp----qsVKSDLENLQKDLKCCGLVNGKTDWsp-----dpFPVSCRCNvtks 166 Mozambique tilapia
XP_531678    106 GATFKSESERILNETLHENIKLLSAAden---akaFQKALTEFQNEFKCCGLVNGAADWgnn---fqeNYKSCECSslsd 179 dog
CAA73724     106 GATFKSESSRILNETLYENAKLLSETsne---akeVQKAMIAFQSEFKCCGLRFGAADWgkn---fpdAKESCQCTgsdc 179 Norway rat
AAH54295     101 GILGVVYKPKIDAQLTESFQKLLPLSgqd----esFKNSFETIQKENECCGLVHGYTDWga------nVPASCNCPstgn 170 African clawed ...
NP_001011430 101 GVLGAVYKPKIEAQLNQTFYKLLPLSgqd----esFKTSFENIQKESQCCGLVNGYTDWga------nIPASCICPttsr 170 western clawed ...
XP_416096    101 GILGAVYKPQLEEGFNLVITEAANLLkentenakqVQESLQKFQLQGHCCGIVDGITDWgnnynlvidGKAVCECErkyq 180 chicken
CAG12382      96 GIVGAVGESKVQEWVKDRLEEKFSPLssk---pesVQQDFEKLQRELKCCGLKGPSDWTk--------IPDSCRCNttep 164 Tetraodon nigro...
AAQ62865     106 GGVALANKHKAENYLKEKIDHISDRKyqnl--taeVKKFVDVIQAEMRCCGMKEVTDWAp-------dYPGTCNCTqkts 176 Branchiostoma b...
CAF89512      97 GGGPPPKPPPAGETPKQKKPPFFCLDeas----qdVKDMGDELQRELHCCGLFSYKDWEg-------nIPDSCVCTegqe 165 Tetraodon nigro...
Feature 1                                          
BAD96742     180 pcq-------syngkqVYKETCISFIKDFLAKNL 206 human
AAX61163     167 atpap---gaecgsegYYSTPCSTRIINLMKENM 197 Mozambique tilapia
XP_531678    180 scv-------mydgknVYKQPCISLIKEVVAKHI 206 dog
CAA73724     180 es---------yngenVYRTTCLSLIKELVEKNI 204 Norway rat
AAH54295     171 cv--------ssggnkYYKETCLNIIADFFKKHL 196 African clawed frog
NP_001011430 171 tnnc-----iyfagknYYKETCLGVISDFFKNHL 199 western clawed frog
XP_416096    181 eenl----ctyfqgryVFKEPCKTVILNFLQTNM 210 chicken
CAG12382     165 d----------cpsskIYQSNCIDKTAEWMKSNL 188 Tetraodon nigroviridis
AAQ62865     177 ddvhdgdkgvcdttsgRWAKPCDNKILDNLRGAI 210 Branchiostoma belcheri tsingtaunese
CAF89512     166 cqrvs--srarllpisIYSKPCFPIIVPYILLVV 197 Tetraodon nigroviridis

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