1PSQ,1QXH,1PSQ,1QXH,1XVQ,1Q98


Conserved Protein Domain Family
PRX_Atyp2cys

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cd03014: PRX_Atyp2cys 
Click on image for an interactive view with Cn3D
Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based interface (A-type for alternate), in contrast with the B-type interface of typical 2-cys and 1-cys PRXs.
Statistics
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PSSM-Id: 239312
Aligned: 49 rows
Threshold Bit Score: 141.568
Created: 3-Feb-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:catalytic triad [active site]
Evidence:
  • Comment:Deprotonation of the catalytic cysteine thiol is facilitated by H-bonding with the threonine or serine hydroxyl group, and the positive charge of the arginine sidechain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              #  #                                   
1PSQ_B     17 QVGDKALDFSLTTTDl---SKKSLAdFDGKKKVLSVVPSIDTGICSTQTRRFNEELag----lDNTVVLTVSXDLPFAQK 89  Streptococcus pneu...
1QXH_B     19 QAGSKAQTFTLVAKDl---SDVTLGqFAGKRKVLNIFPSIDTGVCAASVRKFNQLAte----iDNTVVLCISADLPFAQS 91  Escherichia coli
NP_965009  18 AVGEEMPNFAVLNKNn---QEFTKSdLLGKFSLISVVPDINTPVCSIQTKTFNKTMdk----fPEINFLTISTNTVEDQQ 90  Lactobacillus john...
NP_757783  17 TVGQKAPDFCLAKLDnfaiCDVSLEdFGKKIKIISCFPSIDTGVCDMQTKKLFSEYgn----nEKIVLLNVSSDSLFAFN 92  Mycoplasma penetra...
NP_785797  18 QDGDQLPKFKVFTTHd---EKIKTKdLLGKPVLLSVMPDIDTRVCSIQTKKFNQQAdk----yPHVQFLAISNNAVADQA 90  Lactobacillus plan...
YP_015976  20 KLGDKVTFKATSKTL----ESVTID-KLEKITVLTIFPSISTSICDVQTSEMSKIAse----fTNFNFVAISLDLPFTLK 90  Mycoplasma mobile ...
NP_266460  18 PISGDAPDFELTDLKg---NKIKLS-KLEKPVLISVFPDINTRVCSLQTKHFNLEAak----hSEIDFLSISNNTADEQK 89  Lactococcus lactis...
NP_816550  18 KVGTKAPVFSLKNLNn---QEINLAdYKGKTVLISVVPDIDTRVCSLQTKRFNQEAak----lDGVQIITISNNTVEEQA 90  Enterococcus faeca...
NP_326539  19 QVGDKLTFEATTTSL----ENYEFD-VPGKLTVVSVFPAINTSVCDFQTQEISAIAkk---ygDKLQVLTISVDLPFTLN 90  Mycoplasma pulmoni...
YP_206848  53 KVGDYFPSIELITSNl---QSFDTS-ESGRVKIYSLLTSIDTPVCVQQAIDLAKFTtkhsnmnNGIEFYAISADTPFAQQ 128 Vibrio fischeri ES114
Feature 1                                             #                                
1PSQ_B     90 RWCGAEGlDNAIXLSDYfdHSFGRDYALLINE---WHLLARAVFVLDTdNTIRYVEYVDNINSEPNFEAAIAA 159 Streptococcus pneumoniae
1QXH_B     92 RFCGAEGlNNVITLSTFrnAEFLQAYGVAIADgplKGLAARAVVVIDEnDNVIFSQLVDEITTEPDYEAALAV 164 Escherichia coli
NP_965009  91 TWCAAEDvKNMQLMSDKn-FSFGKATGLLIPE---SGILARSVWVLDPnGKILYRELVDEITHEPNYDAVLNE 159 Lactobacillus johnsonii N...
NP_757783  93 KWCLANEaQNTVMLSDYrdHTFAKAYGVNIKD---ANLIYRSIFIIDEfNFVKYIQLSKGLTDELDFVQIKQA 162 Mycoplasma penetrans HF-2
NP_785797  91 GWCAKEGvKNLTVASDEe-LSFGYATNLYLPN---NGTLTRAIYVADAaGKIVYHEIVPDVSHEPNYVAALDA 159 Lactobacillus plantarum W...
YP_015976  91 EWCGTKNvKNIEVLSDYreREFGKKYGFLIDD---LFLLSRGTIVLDKsNKVIYIEQLKQVKTQIDFEKLRNF 160 Mycoplasma mobile 163K
NP_266460  90 NWCATEG-VDMTILADD--GTFGKAYGLILNGgplEGRLARSVFVVKN-GQIVYSEVLSELSDEPNYEKALAA 158 Lactococcus lactis subsp....
NP_816550  91 NWCAAEG-VEMEMLHDTe-DSFGAAYGLYIPE---MGRLARAIFVIDPeGTLVYEEIVSEVSSEPDYQQALES 158 Enterococcus faecalis V583
NP_326539  91 EWCAAHGvNNIVPLSDHkkLVFGKRNGLLIEE---LGLLARTVIITDEkGIVKYIDINKNVHEQVDFDKFNKE 160 Mycoplasma pulmonis UAB CTIP
YP_206848 129 RFINKYNlNGLKFLSDSieHNFGKETGAQIKE---LGLLTRSIIVVDKnNKIAYYQRVPELTTIPDLNKAVNI 198 Vibrio fischeri ES114

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