1MEK,1G7E,1OVN


Conserved Protein Domain Family
PDI_a_family

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cd02961: PDI_a_family 
Click on image for an interactive view with Cn3D
Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29.
Statistics
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PSSM-Id: 239259
Aligned: 382 rows
Threshold Bit Score: 39.9014
Created: 14-Oct-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
catalytic
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:catalytic residues [active site]
Evidence:
  • Comment:The N-terminal cysteine in the CXXC motif is essential for both oxidase and isomerase activities.
  • Comment:The C-terminal cysteine in the CXXC motif is essential for oxidase activity. It is important, although not required, for isomerase activity. It provides PDI with an escape mechanism from mixed disulfide intermediates that isomerize slowly.
  • Citation:PMID 8639681

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                   #  #                                               
1MEK        10 LVLRKs--NFAEALAAhk-yLLVEFYAPwCgHCKALAPEYAKAAGklkaegsEIRLAKVDAteesDLAQQygv-rgYPTI 85   human
XP_685017  252 TELTAd--TFQTAIKQne-iTVVLFYFKwDaVCMAFIQSYVEVAEave-dvnGVELAAVDCgewtDICRDqni-tsFPTV 326  zebrafish
NP_056998  108 LDLFQgqlDYAEYVRRdsevVLLFFYAPwCgQSIAARAEIEQAASrl---sdQVLFVAINCwwnqGKCRKqkhffyFPVI 184  human
BAA92582   427 VELTEe--TFNATVMAs--dSIVLFYAGwQaVSMAFLQSYIDVAVklk-gtsTMLLTRINCadwsDVCTKqnv-teFPII 500  human
AAX09971   407 EKVVGr--TFDSSVLEshqnVFLEVHTPwCvDCEAISKNVEKLAKhfs-gsdNLKFARIDAsv-nEHPKLkv--nnYPTL 480  maize
NP_175636  420 VTVVGk--TFDGLVLNsrenVLLEVHTPwCvNCEALSKQIEKLAKhfk-gfeNLVFARIDAsa-nEHTKLqvd-dkYPII 494  thale cress
XP_789448  549 TEVADd--TYEDMVLNtakdVLLLYYAPwCgACLRIQHLYLQLASlfr-shdSLRIARINGdl-nDLHWHllt-paYPTI 623  Strongylocentrot...
CAF98124    65 VDLYMgqvDQVERLRSvaevSLVFFYAPwCaHSMAARQELQQVAKkl---arQVQFVAVNCwwsqGRCRRqnhffqFPTI 141  Tetraodon nigrov...
XP_414741   17 IDLFRgqlDYADHLRQdseiVLYFFYAPwCgQSVAVREEIEHVANrl---sdQVLFVAINCwwnqGKCRKqkhffyFPVI 93   chicken
XP_393604   92 LDFYKghlGAMIERVTeadfSFVMYYAPwDaESQTIRQEFEMVAQyy---hsQIFFAAINCwhpsSECRAqynkiqSYPV 168  honey bee
Feature 1                                   
1MEK        86 KFFRngdtasPKEYTAGr--eADDIVNWL 112  human
XP_685017  327 LIYCpka-aaAQPYRGMm--gTKSLQRFI 352  zebrafish
NP_056998  185 YLYHrs--fgPIEYKGPm--sAVYIEKFV 209  human
BAA92582   501 KMYKkg--enPVSYAGMl--gTKDLLKFI 525  human
AAX09971   481 FLYLaedknnPIKLSKKs--sVKDMAKLI 507  maize
NP_175636  495 LLYKsgekekPLKLSTKl--sAKDIAVFI 521  thale cress
XP_789448  624 LFFPgrdkarSVRFPEEsaitLPNLVDFV 652  Strongylocentrotus purpuratus
CAF98124   142 HLFYrr--fgPIEYKGPf--vAPYMESFI 166  Tetraodon nigroviridis
XP_414741   94 HLYHrs--fgPIEYKGPm--sAVYIEKFV 118  chicken
XP_393604  169 LMLYps--rdSGIEYRGi--rTWPYMIKF 193  honey bee

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