1O95


Conserved Protein Domain Family
TMADH_HD_FMN

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cd02929: TMADH_HD_FMN 
Click on image for an interactive view with Cn3D
Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Statistics
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PSSM-Id: 239239
Aligned: 12 rows
Threshold Bit Score: 629
Created: 30-Aug-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1O95; Methylophilus methylotrophus HD binds FMN and a 4Fe-4S cluster
  • Citation:PMID 2545689

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                 # #  #                          #       ##            
1O95_B        2 RDPKHDILFEPIQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDThrlsaRIWDEG 81  Methylophilus me...
Q48303        3 RDPRFDILFTPLKLGSKTIRNRFYQVPHCNGAGTNSPGMNMAHRGIKAEGGWGAVNTEQCSIHPECDDTlritaRIWDQG 82  Hyphomicrobium s...
NP_435383     3 RDSRFDILFEPVKIGPVTARNRFYQVPHCSGMGYRYPNAEAHLRGMKAEGGWAVVSTQEAEIHPTSDLTpaneaRLWDDG 82  Sinorhizobium me...
NP_522243     4 GPARFDPLFEPVQLGPVVAKNRFYQVPHCNGMNRVHPSSMARMRGIKAEGGWGAICTEQCDIHYSGCHPre--lRLWDAQ 81  Ralstonia solana...
BAD30087      7 VAAPYDVLFEPVQIGPFTTKNRFYQVPHCNGMGYRDPSAQASMRKIKAEGGWSVVCTEQVEIHATSDIApfielRIWDDQ 86  Pimelobacter sim...
BAD54700      2 RDNKYDILFEPVRIGPHIAKNRFYQVPHCNGGGYRDPSAAAAMRGIKSEGGWGVIFTEQTEMHHTSEITpfielRLWEDK 81  Rhizobium sp. 4-9
ZP_01198373   7 GVSKYDILFEPIKIGPKTLRNRFYQVPHCIGAGSDKPGFQAAHRSLKAEGGWAALNTEYCSIHPESDDThrvsaRIWDEG 86  Xanthobacter aut...
ZP_01358519   1 MTHPYTLLFEPVRIGPVTAPNRFYQVPHCNGMGYRMPRALAAMRGVKAEGGWGVVCTEEVEIHHSSDLApylegRLWSDD 80  Roseiflexus sp. ...
ABG35545      3 RDPKHDILFEPIQIGPKTLRNRFYQVPHCIGAGSDRPGFQAAHRSMKAEGGWAAMNTEYCSIHPESDDThrlsaRIWDEG 82  Methylophaga sp....
ZP_01447890   3 RDPRFDILFEPLKIGPVTTKNRFYQVPHCTGSGWHKPRTLAGLREVKAEGGWGVVNTEYCSIHPSSDDSphpsaSLWDKG 82  alpha proteobact...
ZP_01626034  19 CHPHHRILFDPIKIGPVVAPNRFYQVPHASGMTESNPRVRAAFRGTKAEGGWGVVSTGAVSIHPSSDDSplpfaRLWNDA 98  marine gamma pro...
YP_921806     6 PAAHHRVLFEPISIGSKTLRNRFFNVAHGTAYGVLRPSTWASYRAVRAEGGWAAVSTEFSSVGPSSDESplhssDIWDGE 85  Nocardioides sp....
Feature 1              #             #                                                          
1O95_B       82 DVRNLKAMTDEVHKYGALAGVELWYGGAHAPNMESRATPRGPSqyasef------etlsyCKEMDLSDIAQVQQFYVDAA 155 Methylophilus me...
Q48303       83 DMRNLRAMVDHVHSHGSLAGCELFYGGPHAPAIESRTISRGPSqynsefatvpgcpgftyNHEADIDELERLQQQYVDAA 162 Hyphomicrobium s...
NP_435383    83 DLPALSAVTERVHAHGSLAAIQLVHNGLHVANRFSRMIPLAPShavsds------ldpvqARAMDKADITDMRRWYRNAA 156 Sinorhizobium me...
NP_522243    82 DIPILAKACEEIHRHGALAGIELAHNGFHVSNLETRAIPIAPSlaptrg------iapvtAREMDKRDIQDVRRWHRTAA 155 Ralstonia solana...
BAD30087     87 DLPALKRIADAIHEGGGLAGIELAHNGMNAPNQLSRETPLGPGhlpvapd----tiapiqARAMTKQDIDDLRRWHRNAV 162 Pimelobacter sim...
BAD54700     82 DIPGLRRMSDAMKVHGALAGIQLAYSGINGPNFYTKEVPLAPSalpirtf----tndpvqARALDKQDIKNLRRWFVNAA 157 Rhizobium sp. 4-9
ZP_01198373  87 DVRNLAAMTSEIHKYGALAGVELWYGGAHAPCMETRQTARGPSqyasef------esltyCHEMDHDDIRRVQGFYVEAA 160 Xanthobacter aut...
ZP_01358519  81 DIPALALMAEAVHRHGALAGIELTHNGHDAMNYYSRTASLGPRsiglmgg---tgfepgqCRRMDLEDIRNLRRWHRSAA 157 Roseiflexus sp. ...
ABG35545     83 DVRNLRAMTDEVHKYGALAGIEMWYGAAHAPNMETRATPRGPSqfasef------etlsyCKEMDLDDIKMVQQYYVDAA 156 Methylophaga sp....
ZP_01447890  83 DIKSHALMTEKVHAHGALAGVELVIGGSQMANLATREVALAPSslmnts------gnpfqTRAMDKSDIKNVRIWHRNAA 156 alpha proteobact...
ZP_01626034  99 DIASHALTTEAVHKHGSLAAVELWHGGAVVMNRTSRLPPLSPSgvpwaath-igfmgqqrPKPMDGKDIDAVLNWQRAAT 177 marine gamma pro...
YP_921806    86 DGRRHKAMVDAVHEHGALASIELHHGGAHAMRRLSREPALSPSglagelpp--pagplgtPKVMTLEDIERVEQSFVDAA 163 Nocardioides sp....
Feature 1                   ## ## #                                                #            
1O95_B      156 KRSRDAGFDIVYVYGAHSYLPLQFLNPYY-NKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVygpgq- 233 Methylophilus me...
Q48303      163 LRARDTGFDLVNVYGAHAYGPMQWLNPYY-NRRTDKYGGSFDNRARFWIETLEKIRRAVNDDVALVTRCATDTLygtkg- 240 Hyphomicrobium s...
NP_435383   157 LRAKKAGFDIVYLYAGHDMSVLQHFLSRRhNDRSDEYGGSFENRLRLFREILDDVREAIGDTCALAVRLAVDELmgpsg- 235 Sinorhizobium me...
NP_522243   156 LNAKRAGFDIVYVYASHDMTLPAHFLSRRhNRRTDEYGGSLENRVRLLRELVMDTKEAVGDRCAVALRFGVDELmgsgg- 234 Ralstonia solana...
BAD30087    163 RRSIEAGYDIVYVYGAHGYSGVHHFLSKRyNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEEidgg-- 240 Pimelobacter sim...
BAD54700    158 KRSKIAGFDLICLYGAHGFGIFQHFLSRAtNQRTDEYGGSLENRSRFAREVVEDIKEAVGDTTAITMRVSLDETigel-- 235 Rhizobium sp. 4-9
ZP_01198373 161 RRARDAGFDIIYCYGAHSYLPLQFLSKYY-NKRTDKYGGSFENRARFWIETLEQMKAAVGSECAIATRFAVDTLigeeg- 238 Xanthobacter aut...
ZP_01358519 158 LRARHAGFDIIYCYAGHGLSLAMHFLLRRyNDRSDAYGGSLENRVRLLRELIEDTKDAVGDRCTVAVRLAVDELlgdeg- 236 Roseiflexus sp. ...
ABG35545    157 YRARDAGFDIVYVYGAHSYLPLQFLNPYY-NKRTDGYGGSLENRARFWVETLEKVRKAVGDDCAIATRFAIDTIygpdq- 234 Methylophaga sp....
ZP_01447890 157 LRAKEAGFDIVYVYATHGYLISQFLSPTT-NKRIDEYGGSLGNRIRFMREIIEDTKEAVGDTMAVAVRFSAETNanksgg 235 alpha proteobact...
ZP_01626034 178 RRALDAGFDIIYVYAGMGYLGYEFLLPEY-NWRTDGYGGSLENRTRFVREMLEVTRDEAGGRAAVALRISLEELrakps- 255 marine gamma pro...
YP_921806   164 VRARDVGYDIVDVLAGYGYLFAQFLSAFH-NHRTDKYGGSLENRARFWIETLGRVRDAVGADCAVASRMSIQTQgpwg-- 240 Nocardioides sp....
Feature 1                                                                                       
1O95_B      234 --ieaeVDGQKFVEMADSLVDMWDITIgdiaewgedagpsrfyqqghtipWVKLVKQVSKKPVLGVGRYTDPEKMIEIVT 311 Methylophilus me...
Q48303      241 --veltEDGLRFIELASPYLDLWDVNIgdiaewgedagpsrfypiahendWIRHIKQATNKPVVGVGRYYDPEKMLQVIK 318 Hyphomicrobium s...
NP_435383   236 --itceGEGKDIISALGELPDLWDVNLsdwsndsqta---rfseegyqepYIRFVKSVTTKPVVGVGRYTSPDSMVRVVK 310 Sinorhizobium me...
NP_522243   235 --lsseGEGRDVVEMLADLPDLWDVNLspfgndgqts---rfsdegfqdrYIRFVKRVTGKPVVGVGRFTSPDHMLALVT 309 Ralstonia solana...
BAD30087    241 ---itrEDIEGVLRELGELPDLWDFAMgswegdsvts---rfapegrqeeFVAGLKKLTTKPVVGVGRFTSPDAMVRQIK 314 Pimelobacter sim...
BAD54700    236 --gfsnAEVREFVEMNANLPDLWDLAQgtwedcsgps---rfkeegaqeiLVKGIRELSSKPVVGVGRFTSPDVMARMVR 310 Rhizobium sp. 4-9
ZP_01198373 239 --ieveRDGLKFVELADDLVDLWDVNVgdiaewgedagpsrfyrqghqlsWQKFVKQASKKVVLGVGRFTDPEKMVEVIR 316 Xanthobacter aut...
ZP_01358519 237 --ltsqGEAYEIVAMLAELPDLWDVNVanwsndsass---rfekegfqepYIAFVKQLTSKPVVGVGRYTSPESMVSAVR 311 Roseiflexus sp. ...
ABG35545    235 --ieveEDGVKFIEMADDFVDLWDITVgdiaewgedagpsrfyqqghtvpWVEHVKRVSKKPVLGVGRYTDPRKNDEIVT 312 Methylophaga sp....
ZP_01447890 236 dgnpipGETEEILGLLGEFPDLWDINIndyslemgls---rftkeaslmpYVKGIKELTSKPVVTVGRFTSPDTMLAQIK 312 alpha proteobact...
ZP_01626034 256 --dhyaSEAHGVVSLLSDVPDLWDVKMdsspndcgas---rfrpegahepIIDFVRTVTDRPVVGVGRFTSPDTMVSQIK 330 marine gamma pro...
YP_921806   241 ---htlDESVELVRMADPLVDLWDLNVgsvldwgsdispsrvipeghnveLFTRVRSATQKPIVGVSRWTSPDLMAEVVR 317 Nocardioides sp....
Feature 1                ##                      #  #  #  ##              #  ## #       
1O95_B      312 KGYADIIGCARPSIADPFLPQKVEQGRYDDIRVCIGCNVCISRWEi----------GGPPMICTQNATAGEE 373 Methylophilus methylotro...
Q48303      319 AGIIDIIGAARPSIADPWLPRKIDEGRVDDIRTCIGCNVCISRWEm----------GGVPFICTQNATAGEE 380 Hyphomicrobium sp. X
NP_435383   311 QGILDFIGAARPSIADPFLPKKIEEGRIDDIRECIGCNICTSGDN-----------TNVPMRCTQNPTVGEE 371 Sinorhizobium meliloti 1021
NP_522243   310 SGALDLIGAARPSIADPFLPEKIRNGAFDDIRECIGCNLCVASDK-----------LSVPLRCTQNPTMGEE 370 Ralstonia solanacearum G...
BAD30087    315 AGILDLIGAARPSIADPFLPNKIRDGRLNLIRECIGCNICVSGDL-----------TMSPIRCTQNPSMGEE 375 Pimelobacter simplex
BAD54700    311 QGVLDFIGCARPSIADPFLPKKIEEGRIEDIRECIGCNICITGDM-----------TMSISRCTQNPTFMEE 371 Rhizobium sp. 4-9
ZP_01198373 317 NGELDVIGAARPSIADPFLPEKIRDGRLDDIRTCIGCNVCISRWEi----------GGPPMICTQNATAGEE 378 Xanthobacter autotrophic...
ZP_01358519 312 RGILDFIGAARPSIADPFLPRKIREGRVEDIRECIGCNICVTGDN-----------KCVPIRCTQNPTMGEE 372 Roseiflexus sp. RS-1
ABG35545    313 KGVVDIIGCARPSIADPFLPKKVEEGRYDDIRVCIGCNVCISRWEi----------GGPPMICTQNATAGEE 374 Methylophaga sp. SK1
ZP_01447890 313 GGIVDLIGAARPSIADPFLPKKIQEGKFEDIRECIGCNICYVGDG-----------KGVPIRCTQNPTMSEE 373 alpha proteobacterium HT...
ZP_01626034 331 RGVLDLIGGARASIADPFLPEKIRRGDTDAIRECIGCNMCIASWH-----------DGVPVRCTQNATAGEE 391 marine gamma proteobacte...
YP_921806   318 SGVIDLIGSARQSIADPFFPQKVYEGRIEDIRECMGINHCISSLDrgnmacaqnatAGEEYRRGWHPERFEP 389 Nocardioides sp. JS614

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