1J1L,3ACL,6D0P,2P17,6D0G


Conserved Protein Domain Family
cupin_pirin_N

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cd02909: cupin_pirin_N 
pirin, N-terminal cupin domain
This family contains the N-terminal domain of pirin, a nuclear protein that is highly conserved among mammals, plants, fungi, and prokaryotes. It is widely expressed in dot-like subnuclear structures in human tissues such as liver and heart. Pirin functions as both a transcriptional cofactor and an apoptosis-related protein in mammals and is involved in seed germination and seedling development in plants. The pirins have been assigned as a subfamily of the cupin superfamily based on structure and sequence similarity. The pirins have two tandem cupin-like folds but the C-terminal cupin fold has diverged considerably and does not have a metal binding site. The exact functions of pirins are unknown but they have quercitinase activity in Escherichia coli and are thought to play important roles in transcription and apoptosis. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold generally capable of homodimerization.
Statistics
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PSSM-Id: 380374
Aligned: 114 rows
Threshold Bit Score: 121.874
Created: 27-Sep-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
metal bindingintramolecular
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H H H EClick to see conserved feature residue pattern help
Evidence:
  • Structure:1J1L: Homo sapiens pirin binds iron; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              # #                                    
1J1L_A     22 ARVRRSIgrpelknlDPFLLFDEFKGGrp-------gGFPDHPHRGFETVSYLLegGSXAHEDFcGHTGKXNpgDLQWXT 94  Homo sapiens
OJU08938   20 LVTRRPLpgpqigqlDPFLFLNHHGPQtyapn-nrglPFGPHPHRGFETVTFILe-GELAHLDSgGHESIIRagGVQWMT 97  Caulobacterales ba...
PHS21006   26 LVTRRPLpgpqleqlDPFLFLNHHGPQtypan-nrglPFGPHPHRGFETVTFILe-GSLAHADSaKHQSVINagGVQWMT 103 Halomonas sp.
PZR39536   20 MPVRQPFpthkveqiDPFLLLHHADIKapeninpdhaGVGPHPHRGFSPVTFIFq-GGVHHRDSrGNDSVIYagGAQWMN 98  Azospira oryzae
PWU00048    7 LTMYQPLpthdlqqiDPFILLHHHGPHrfepy-nkglPFGPHPHRGFETVTLIFe-GNVVHHDSqGFKSTIRegGVQWMT 84  Bacteroidetes bact...
OON69413   20 LPIFHALpaggldqiDPFLLLDHIGPVvlepy-naglPFGPHPHRGFATVTIVLa-GAVLHHDSrGNRQVVGagGVQWMT 97  Hymenobacter sp. CRA2
PWT76455   20 NRVRRALptrnlkqvDPFLFIDYLLPVkink--gadiRIPPHPHAGFDVVTYLLn-GEFFHRDSkGHEQVARagDVNWMN 96  Bacteroidetes bact...
NP_638062  15 LQVRRAVptlqarsvGPFVFVDHMGPAvlep--dhgiDVRPHPHIGLATVTFLWs-GEIGHRDTlGSDQVIRpgDVNWMT 91  Xanthomonas campes...
P58114     16 FEVGRVLpfhahrmvGPFTFLDHMGPAafqpgfpksaDVRPHPHIGLSTLTYLFe-GEITHRDSvGSLAVIKphEVNWMT 94  Caulobacter vibrio...
NP_746294  23 QPILRPLpsaqcrsvGPFVFFDHMLETdyap--ghgmDIRQHPHIGLSTLTYLFe-GAILHKDSlGSAQRVLpgDVSWMT 99  Pseudomonas putida...
Feature 1           # #                       
1J1L_A     95 AGrgILHAEXPCs-----eEPAHGLQLWVNLR 121 Homo sapiens
OJU08938   98 AGsgLVHAEVSPesfkragGPMEILQLWVNLP 129 Caulobacterales bacterium 68-7
PHS21006  104 AGsgIVHAEISPdeflrdgGPLEILQLWVNLP 135 Halomonas sp.
PZR39536   99 AGrgVIHSERPPrdihelgGRQEIIQLWINTP 130 Azospira oryzae
PWU00048   85 AArgIVHSEQLDkemqehgGPLEIIQLWINLP 116 Bacteroidetes bacterium
OON69413   98 AArgIIHAENLPrelretgGELELLQLWLNLP 129 Hymenobacter sp. CRA2
PWT76455   97 AGsgIIHSEGPTgaflekgGHLELMQVWINLP 128 Bacteroidetes bacterium
NP_638062  92 AGrgIAHSERTPgperareHALHGMQTWIALP 123 Xanthomonas campestris pv. campestris str. ATCC 33913
P58114     95 AGsgITHSERFEglr-ehgGRMDGMQAWVALP 125 Caulobacter vibrioides CB15
NP_746294 100 AGsgIAHVERTPedalahgSRLHGLQVWLASP 131 Pseudomonas putida KT2440

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