1SQC,1W6J,1W6K,2SQC


Conserved Protein Domain Family
SQCY

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cd02889: SQCY 
Click on image for an interactive view with Cn3D
Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Statistics
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PSSM-Id: 239219
Aligned: 47 rows
Threshold Bit Score: 264.467
Created: 16-Aug-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
catalyticactive center
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1:catalytic residue [active site]
Evidence:
  • Comment:The catalytic Asp protonates the 1st C=C double bond of squalene, resulting in a carbocation for the initiation of ring cyclization.
  • Comment:A water molecule acts as a base to receive a proton on the other end of the squalene molecule.
  • Citation:PMID 9931258

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
1SQC        15 LDRAVEYLLSCQKDe-GYWWGPLlsnvtmeaeyvllchildrvdrdrmekirryllheqredgtwalypggppdldttie 93   Alicyclobacillus...
NP_618075   70 IGKASNFIISNQSDe-GYWLDFYipg------------------------------------------------------ 94   Methanosarcina a...
XP_758387  155 ARNGLSFYRHLQSSd-GHWAGEYggpmfllpgiiigmyatktpipeewkieiarylwnradkadggwgihiegcstvfgt 233  Ustilago maydis 521
P38604      77 CHNGASFFKLLQEPdsGIFPCQYkgpmfmtigyvavnyiagieipeherieliryivntahpvdggwglhsvdkstvfgt 156  baker's yeast
Q96WJ0      71 ARKGFSFYKHLQTSd-GNWACEYggvmfllpgliiamyiskiefpdemrievirylvnhanpedggwgihiegkstvfgt 149  Pneumocystis car...
CAG77797    91 ALKNWHLFASLQDPdsGAWQSEYdgpqfmsigyvtacyfggneiptpvktemiryivntahpvdggwglhkedkstcfgt 170  Yarrowia lipolyt...
EAL89318    85 VENGWEFFKRLQTAd-GHWGCNDdgplfvtsgmviaryivgipidshmkqemcryllnvvnedggwglfiqspstvfgtv 163  Aspergillus fumi...
T48782      97 VRNGLTFFEKLQLPe-GHWGCEYggpmfllpgvviaryvtknpvpwyyateiknylfaranpvdggwglhiegestmlgt 175  Neurospora crassa
EAA58998    90 AENGLEFFSKLQLPp-GNWACEYggpmfllpgliityyvtntpippeyateiirylfarqhpedggwglhieahssvfgt 168  Aspergillus nidu...
Q10231      74 AEYGYEFFRRLQLPd-GHWASPYegpmflicgavfafyisqtpfpkgwapeiiqylinhtnddggwgihtegvstvfgts 152  fission yeast
Feature 1                                                                                      
1SQC        94 ayvalkyigmsrdeepmqkalrfiqsqggiessrvftrmwlalvgeypwekvpmvppeimflgkrmplniyefgswara- 172  Alicyclobacillus...
NP_618075      --------------------------------------------------------------------------------      Methanosarcina a...
XP_758387  234 alnytvlrligvsadhpmmvkargtlhklggatgipswgklwlailncyewegmnpippelwllpdwlpihpwrwwihtr 313  Ustilago maydis 521
P38604     157 vlnyvilrllglpkdhpvcakarstllrlggaigsphwgkiwlsalnlykwegvnpappetwllpyslpmhpgrwwvhtr 236  baker's yeast
Q96WJ0     150 alnyvvlrilglgpdhpvtmkarirlnelggaigcpqwgkfwlavlncygweginpilpefwmlpewlpihpsrwwvhtr 229  Pneumocystis car...
CAG77797   171 sinyvvlrllglsrdhpvcvkarktlltkfggainnphwgktwlsilnlykwegvnpapgelwllpyfvpvhpgrwwvht 250  Yarrowia lipolyt...
EAL89318   164 mnycmlrilglgpehpamakarntlhrlgsaratptwgkfwlcvlgvyewegmvplppepllvpaslpfnpgkwwvhtrn 243  Aspergillus fumi...
T48782     176 tlnyttlrlvgveadhpvmvkaratmhkmggaiyaphwakfwltvlgimkwdivnpvppelwllpdwvpiapwrwwihmr 255  Neurospora crassa
EAA58998   169 smnyvvlrllgvgeddprmikargllhsfggavygphwskfwlsilgvmdwdcvnpvppelwfvtvniaaldvranlnrl 248  Aspergillus nidu...
Q10231     153 mnyvvlrilgmdaghpvatrarnrlhelggaigcphwgkfwlatlncydwdgvnpippelwllpdwipfhpgkwwchvrl 232  fission yeast
Feature 1                                                                                      
1SQC       173 --------------------------------tvvalsivmsrqpvfplperarvpelyetdvpprrrgakggggwifda 220  Alicyclobacillus...
NP_618075      --------------------------------------------------------------------------------      Methanosarcina a...
XP_758387  314 mvyipm-------------------gylwgrkfkaeidplieslrqelyvepyesinwpaqrgniasvdifyphtktlkt 374  Ustilago maydis 521
P38604     237 gvyipvs------------------ylslvkfscpmtplleelrneiytkpfdkinfsknrntvcgvdlyyphsttlnia 298  baker's yeast
Q96WJ0     230 avylpmg------------------yiygekftapvdplieslreelytqpyssinfskhrnttspvdvyvphtrflrvi 291  Pneumocystis car...
CAG77797   251 rwiylam------------------gyleaaeaqceltplleelrdeiykkpyseidfskhcnsisgvdlyyphtgllkf 312  Yarrowia lipolyt...
EAL89318   244 vyisms--------------------ylyghrfsmppnklvqalrdelydipyqqinwpaqrtnvsaadrltdptwiqrs 303  Aspergillus fumi...
T48782     256 qvflpms-----------------ylwskkwqaeetdlirelrnelfvedwnkidwagnrntihpndnyhpktaflntvn 318  Neurospora crassa
EAA58998   249 lpdwvpfapwrwwihmrqvflpmsylwskkftypltpltkqlrhelytqpydsidfashrnsihkadnyypktwllnsln 328  Aspergillus nidu...
Q10231     233 vylpmg-------------------ymygerlkcpkdslimqlrkelyvenydsinfadhrntisdvdlyfphtqildrl 293  fission yeast
Feature 1                                                                                      
1SQC       221 ldralhgyqklsvhpfrraaeiraldwllerqagdgswggiqppwfyalialkildmtqhpafikgweglelygveldyg 300  Alicyclobacillus...
NP_618075      --------------------------------------------------------------------------------      Methanosarcina a...
XP_758387  375 lmalvgaydnchipplrragikrayellvledentsyqclgpvnkmlnyvarweveghdshamrmhreklkdfmwigpeg 454  Ustilago maydis 521
P38604     299 nslvvfyekylrnrfiyslskkkvydliktelqntdslciapvnqafcalvtlieegvdseafqrlqyrfkdalfhgpqg 378  baker's yeast
Q96WJ0     292 nsiltfyhtifrfswikdmaskyayklieyenkntdflcigpvnfsihilavywkegpdsyafkshkermadflwiskkg 371  Pneumocystis car...
CAG77797   313 gnallrryrkfrpqwikekvkeeiynlclrevsntrhlclapvnnamtsivmylhegpdsanykkiaarwpeflslnpsg 392  Yarrowia lipolyt...
EAL89318   304 ftsaltmyetfkipflrrralnealfqietetrnthylciapvsfasnmlalyhahgrdshwirgmrdrfidpmwlcreg 383  Aspergillus fumi...
T48782     319 wllvniwnpvfrtkylvekaeawaselidmedentdysdlapvnaamntvccyvrdgpgaysvrrhverldevlwvnaeg 398  Neurospora crassa
EAA58998   329 sllvnvwnpffrtsaivkraedwtwelirmedentdyaglgpvnnpmnmiaclvhdgpdsysvrrhrerlhdymwmkdeg 408  Aspergillus nidu...
Q10231     294 nwilekyftylrpswlkklgtrrayelikiedqntdyscigpvnaamntvcvyfhegpsskafqkhiqrlhdfmwvqpeg 373  fission yeast
Feature 1                                                                                     #
1SQC       301 gwmfqasiSPVWDTGLAVLAlraagl---padhdrLVKAGEWLLdrqitvpgdw-avkrpnlkpGGFAFqfdnvyypdvD 376  Alicyclobacillus...
NP_618075   95 -----mgkSSQWVTAYIAYSlsrlp-----ntdksVQKAIVWLLhtk--------------fssGGWGYhqnc--lpdaD 148  Methanosarcina a...
XP_758387  455 mmmtgtngSQLWDTSFIAQAmvdsglaaaqenrqlTQKLLDWLDecqirdnpkhfktcyrfatkGAWPFstkeqgyvvsD 534  Ustilago maydis 521
P38604     379 mtimgtngVQTWDCAFAIQYffvaglaerpefyntIVSAYKFLChaqfdtecv--pgsyrdkrkGAWGFstktqgytvaD 456  baker's yeast
Q96WJ0     372 mmmngtngVQLWDTSFAVQAlvesglaedpefkdhMIKALDFLDkcqiqkncddqqkcyrhrrkGAWPFstrqqgytvsD 451  Pneumocystis car...
CAG77797   393 mfmngtngLQVWDTAFAVQYacvcgfaelpqyqktIRAAFDFLDrsqinepte--ensyrddrvGGWPFstktqgypvsD 470  Yarrowia lipolyt...
EAL89318   384 laasgtngTSLWDTALTVQAtidaglaarpenqaiLRKALEFIDnsqiredplgvhhvyrqptrGAWPFstrdqsyavsD 463  Aspergillus fumi...
T48782     399 mlcngtngVQCWDTAFAIQAimdagltedprwrpmLIKSLEFLEdqqirenvkdqdkcyrhprkGAWAFsnkdqgyavsD 478  Neurospora crassa
EAA58998   409 mlmngtngVQVWDTAFITQAivvagfaddpkwrpmLTKALGFLDahqlrenvpnqekcyrqhrkGAWPFsnktqgytvsD 488  Aspergillus nidu...
Q10231     374 mlmrgtngLQVWETSFTLQAlvesglyekeafkpdIAKALEFLDrqqirtqye--gsgyrynslGAWPFsnitqgytvsD 451  fission yeast
Feature 1                                                                                      
1SQC       377 DTAVVVWALntlrlpd------errrrdaMTKGFRWIVGM----QSSNGGWGAYDvdntsdlpnh--ipfcdfgevTDPP 444  Alicyclobacillus...
NP_618075  149 STANVVRLLayyfkkenl--ltqenfvfyLHEFADLLASYq---DRNTGGFLTYLpgsngky-------htmpdsaWCIS 216  Methanosarcina a...
XP_758387  535 CTAEGLKAVimlqesvpy--lskqvsrerMHDSIDLLLTM----QNPGGGFASYEtingpallelinpaevfgdimIEYA 608  Ustilago maydis 521
P38604     457 CTAEAIKAIimvknspvfsevhhmisserLFEGIDVLLNLqnigSFEYGSFATYEkikaplametlnpaevfgnimVEYP 536  baker's yeast
Q96WJ0     452 CTAEALKAVlllqnlksf---pkrvsydrLKDSVDVILSL----QNKDGGFASYElirgpswlefinpaevfgdimIEHS 524  Pneumocystis car...
CAG77797   471 CTAEALKAIimvqntpgyedlkkqvsdkrKHTAIDLLLGMqnvgSFEPGSFASYEpirassmlekinpaevfgnimVEYP 550  Yarrowia lipolyt...
EAL89318   464 TTAEAVKVIvllqriegf---psrisderLQQAIDLILGM----ENAGGGFSAYEpvrgpkflellnitelyenvmTDNL 536  Aspergillus fumi...
T48782     479 CVSEALKSViilqktpgf---ptliddqrIFDAVDTMLTY----QNPSGACSSYEtpragqwmevlnaaevfgnimVEYE 551  Neurospora crassa
EAA58998   489 CTAEGLRSTiqlqemhnf---pkmiseerLKDSVDCLLLM----QNPSGGFTEYEttrgspkiewlnaaevfggimIGYD 561  Aspergillus nidu...
Q10231     452 TTSEALRAVllvqslpdf---eklvdiprLRLSVDVILGM----QNENLGFASYEpartgewmellnpaevfgnimVEYS 524  fission yeast
Feature 1                                                                                      
1SQC       445 SEDVTAHVLECFGSFGYDdaw-------kviRRAVEYLKREQkpDGSWFGRWGVNYLYGTGAVVSALKavgid-trepyI 516  Alicyclobacillus...
NP_618075  217 EPSITAMAGNAFLTAGPEwfe-------qeiSKAREFLISRQnsAGYWDSYWWDCRIYGTSLACNFLKqlge----idpV 285  Methanosarcina a...
XP_758387  609 YPECTTSVVTALLKFTKIddyrkd-diskcvDSAVKYILRAQrdDGSWFGSWAICFTYATMFAVESLMlaghtydnseaI 687  Ustilago maydis 521
P38604     537 YVECTDSSVLGLTYFHKYfdyrke-eirtriRIAIEFIKKSQlpDGSWYGSWGICFTYAGMFALEALHtvgetyensstV 615  baker's yeast
Q96WJ0     525 YPECTTAAVTALCYFRSLcshyrgpeinksvKNAIQFIKESQrpDGSWYESWAICFTYATMFALESLScvkdfyensfhS 604  Pneumocystis car...
CAG77797   551 YVECTDSVVLGLSYFRKYhdyrne-dvdraiSAAIGYIIREQqpDGGFFGSWGVCYCYAHMFAMEALEtqnlnynncstV 629  Yarrowia lipolyt...
EAL89318   537 YPECTSSVIMCLTTFAREyptyrprdiqaclSRSIDYLLRSQypNGGWFASWGVCFTYATMFALQGLAcmgwnesncaaC 616  Aspergillus fumi...
T48782     552 YPECTTAVLTTLSLFKKHwpnhrtaeidnfiTRAVKWIKSNQkpHGGWYGNWGICFTYATMFALESLAsvgetyensryA 631  Neurospora crassa
EAA58998   562 YPECTTASVTALSLFSKFypnyraeeikaakDKAVKYIKRVQraDGSWYGSWGICFTYAAMFALESLAsigetyetsnyA 641  Aspergillus nidu...
Q10231     525 YPECTTSVILALRAFTKYdpgyrrdeientiENALEYVVKMQrpDGSWYGSWAICFTYAAMFATGSLAsagryyencpvQ 604  fission yeast
Feature 1                                                                                      
1SQC       517 QKALDWVEQHQNpDGGWGEDCRSYedpay-agkgaSTPSQTAWALMALIAggraeseaARRGVQYLVetQRPDGGWDe-- 593  Alicyclobacillus...
NP_618075  286 KKAISWLKSIFVpSKGWGNGYEAVpyp-----fytALSLSSLLLFENNIHsr-----eVKDSVLWLIenQNEDGSWFskp 355  Methanosarcina a...
XP_758387  688 RKACKFLESKQMhDGGWGETYKSCetgvy-tpankSQVVQTAWVIITLLHakypqkdrIRKAVKVIMdrQLADGSWAq-- 764  Ustilago maydis 521
P38604     616 RKGCDFLVSKQMkDGGWGESMKSSelhsy-vdsekSLVVQTAWALIALLFaeypnkevIDRGIDLLKnrQEESGEWKf-- 692  baker's yeast
Q96WJ0     605 RRACDFLVNKQEeDGGWSEGYQSCtdgiwtrhptgSQVVQTAWACIGLMYanypdetpIKRGINLIMsrQQPNGEWKq-- 682  Pneumocystis car...
CAG77797   630 QKACDFLAGYQEaDGGWAEDFKSCetqmy-vrgphSLVVPTAMALLSLMSgrypqedkIHAAARFLMskQMSNGEWLk-- 706  Yarrowia lipolyt...
EAL89318   617 QRACSFLLQHQNpDGGWGESLDTVrfkqylphpdgSQVTNTAYAVIGLLAarcgnheaIRRGVAYLVkeQQDTGEWLp-- 694  Aspergillus fumi...
T48782     632 KKGCDFLVAKQReDGGWSESYKACetgeyvehptgSQVVMTAWALVGLIKakypnndpIKKGIKLIMdrQQPNGEWRq-- 709  Neurospora crassa
EAA58998   642 RRGCEFLISKQKeDGGWGESYLSSekhvy-vqhekSQVCQTAWACLALMEagyphkepLQKAMKLIMsrQQPNGEWLq-- 718  Aspergillus nidu...
Q10231     605 KKACEFLLSKQRpDGGWSESYMACvtgvy-tetesSLVTQTGWALDALINakypdrkpIEKGIKFLMasQKSDGSWQq-- 681  fission yeast
Feature 1                                                        
1SQC       594 ----------pYYTGTgfp---------gdFYLGYTMYRHVFPTLALGRY 624  Alicyclobacillus acidocaldarius
NP_618075  356 ilrvpdpqvrePWVGSnrekcevvtdvnllFTTATVMGALYDFLNLSGYY 405  Methanosarcina acetivorans C2A
XP_758387  765 ----------eQIEGIfn----------rnCAISYPNYKFSFTIWALGKA 794  Ustilago maydis 521
P38604     693 ----------eSVEGVfn----------hsCAIEYPSYRFLFPIKALGMY 722  baker's yeast
Q96WJ0     683 ----------eAIEGVfn----------knCMISYPNYKFNFTIKALGMY 712  Pneumocystis carinii
CAG77797   707 ----------eEMEGVfn----------htCAIEYPNYRFYFVMKALGLY 736  Yarrowia lipolytica CLIB99
EAL89318   695 ----------gPLEGVfa----------ppGGMRYPNYKFHFTLMALGRY 724  Aspergillus fumigatus Af293
T48782     710 ----------eAIEGVfn----------ksCMISYPNYKFSFPLKALGLF 739  Neurospora crassa
EAA58998   719 ----------eAIEGVfn----------qsCMISYPNYKFYWPIRALGLY 748  Aspergillus nidulans FGSC A4
Q10231     682 ----------kSMEGIfn----------knVAIAYPNYKLYFSIYTLGKF 711  fission yeast

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