Conserved Protein Domain Family
Heme_Cu_Oxidase_III_2

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cd02865: Heme_Cu_Oxidase_III_2 
Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria.
Statistics
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PSSM-Id: 239216
Aligned: 12 rows
Threshold Bit Score: 144.82
Created: 29-Jul-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Subunit I/III
Feature 1:Subunit I/III interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             ##             #   ##                                                     
ZP_00214974  12 APPGLSNAGRTGLAVFMAVATTLFSLLLLAYAMRMRESdwq-----piPHPALLWWNTGALALASLAMQRARQlt----- 81   Burkholderia sp...
CAC47097     39 RGATRLPPAKIGLGVFLAVVGALFSLAISAYFMRMASSdwg-----alPLPGLLWLNTGILAAGSITLHWTKVeaer-rn 112  Sinorhizobium m...
CAD73909      8 SVLPTDRRYRQGGWLFLGTLLVFFFSSLLLYGIYASSRlgdv--qssvPLPNSFLTSTVLLLCISGLVHWSTRsvrr-sk 84   Rhodopirellula ...
CAG22261     28 LPADASSPAIIGLWVFMAVITMLFFLFTVAYKIRMSLNdwq-----plNEPWQLSLSTAMLLMSCVAMANCRRkaallps 102  Photobacterium ...
NP_102721    41 LDRSALPTAKIGLGVFLAVVGCLFALFTSAYFMRMAVSdwq-----plPLPRLLWLNTGVLILSSVALQCTSVaarr-gq 114  Mesorhizobium l...
ZP_00593589  33 HGHGARTPGSLGLWVFMGVVTALFTLFLAAYIMRMDSPdwq-----riALPWQVWLSTAVLAAACVAMEIARRaahs-gr 106  Ralstonia metal...
CAA48549     41 TDAMTWPAAKVGLGVFLAVAGSLFTLFISAYSMRMNMVdwr-----tmPVPKVLWFNTGVLVLSSVALQWALMaarr-nd 114  Bradyrhizobium ...
ZP_00309626  19 KPTFAMEPKKFLLWLFIVTIVMLFAAMTSAYLVRSTDGdwl-----kfDLPNRFLVSTGVIILSSVTMQWAFGaakn-nn 92   Cytophaga hutch...
ZP_00207660 649 YVSGSGAVGWWAVWITMLGDSTAFASLVFGVFFYWTAGtdyppagaahADGPLALAALALGAASWALTLAAREanrr-hr 727  Rhodobacter sph...
ZP_00519621  15 YEVSNQSPLFWGQVLMCVIEGSLLCMLIAVYFYLRLRVdvwpapgvhlPGLTLPSLALIPLFASCVGSYLASEaakk-ns 93   Solibacter usit...
ZP_00281578 691 FGFSHRSLMWWATAGLMLIEGTVFAMAVGMYFYLRTVNaawpm-nappPSLVWGSLNTAVLVASLWPNQLARRaaen-ge 768  Burkholderia fu...
ZP_00493185 759 GSAGEHAGGWWGMATLIATEAALFGYLIFSYFYLQSQTperwp-peglPKLALASFNTAVLVSSSVFVWLADRlvar-rr 836  Burkholderia ps...
Feature 1                                                ##  #   #                              
ZP_00214974  82 -mHRTAWLVSGGVLAAVFVIGQLTAWHMLsaa---getVTVNPSNSFLYLLTGLHGVHVLGGLVAWAATIAQLrradp-- 155  Burkholderia sp...
CAC47097    113 deAARIGLLAGLALGLAFLAGQLFAWRALsda---gyfLAGNPANSFFYLLTGMHGLHIIGGLFALGRVTAHAsqtpl-g 188  Sinorhizobium m...
CAD73909     85 rvLTASLLALSAIAAVAFMAIQYVAMLGLlggp-amqgGTGKGVAGMVVVLAFLHALHVAGGVIALGIVSVRSmlgky-d 162  Rhodopirellula ...
CAG22261    103 vvACRSILIVAVLFTLGFVFTQLWAWQYLvdq---nitVDNNPANSFFYLLTGLHGLHVLGGLAALFLVIYNArkgha-- 177  Photobacterium ...
NP_102721   115 idTVRLGLATAGLTALAFLVGQLMAWRQLtad---gyfLASNPANSFFYLITGMHGLHVLGGLVGLGRTTTSAwtgtr-p 190  Mesorhizobium l...
ZP_00593589 107 mvRARHAFRLGGMGAVAFVGVQLWAWQALyal---hvvPANNPAGSFFYLLTAMHGLHMLGGLVAFAFVAVDRgsgt--- 180  Ralstonia metal...
CAA48549    115 idGVVVGLLAGGASAIAFLAGQLLAWHQLsda---gyfMASNPANAFFYVITAVHGLHLTGGLVALGRTTAGVwrhdtgt 191  Bradyrhizobium ...
ZP_00309626  93 rtMLLVALTGTIILGLIFLKLQVDGWGQLvdqkvflggRYSNPAGSFVYILSGLHGFHLITGLIYLLIVLYSSirtqa-g 171  Cytophaga hutch...
ZP_00207660 728 tgLARLCLSAAPLLTLATGAALIASPHVAgl------ePTEHVYPASMWVLVVWTVAHLIAGLIFQLYGLAGLifgri-t 800  Rhodobacter sph...
ZP_00519621  94 raGMLLGLGLNLGLATVFLVLRALEWSRLnf------tWASDAHGSIFWTILFLHSYDIIADVLMTAVLLTIVasghy-g 166  Solibacter usit...
ZP_00281578 769 reRARLWLLVCLAFAVAFLVVRGFEFAALnv------mWYANSYGSIVWLLLGLHTTHLITDTVDTAVLATLLytgpf-e 841  Burkholderia fu...
ZP_00493185 837 prAASVALAVAIALGAAFALIQWHEWRGHpy------gMTAHLYGSLYFTITGFHLAHVVVGLAVLAALAFWTmrgyf-d 909  Burkholderia ps...
Feature 1                                      
ZP_00214974 156 frarHAIALCALYWHFLLAVWLVLLAAMWWL 186  Burkholderia sp. 383
CAC47097    189 nrtrLSIELCAIYWHFMLIVWLVLFALFAGW 219  Sinorhizobium meliloti
CAD73909    163 herhWPVDFAAQYWHFLDLVWLCMLATFVAT 193  Rhodopirellula baltica SH 1
CAG22261    178 nslyQSLHLCTRYWHFLLLIWLFLLGLLRFT 208  Photobacterium profundum SS9
NP_102721   191 erlrLGVELCAMYWHFLLFVWLAIFALLAGW 221  Mesorhizobium loti MAFF303099
ZP_00593589 181 -rtvTRIGLCARYWHFLLAVWVVLLGALGWL 210  Ralstonia metallidurans CH34
CAA48549    192 aemrLSVELCTIYWHFLLLVWLVLLGLLTGW 222  Bradyrhizobium japonicum
ZP_00309626 172 slnlLQIEMCTTYWHFLDLLWIYLFVFLQVN 202  Cytophaga hutchinsonii
ZP_00207660 801 prydAPLWNSALFWHFLGLTVLVTVAMIAGA 831  Rhodobacter sphaeroides 2.4.1
ZP_00519621 167 prqrIGVHVDSILWYFLVGIWIPLYAVIYWG 197  Solibacter usitatus Ellin6076
ZP_00281578 842 kkrlLDTSENAVYWYFVVLSWLPIYAVIYFV 872  Burkholderia fungorum LB400
ZP_00493185 910 drrrAALSIGGLYWHFVDIVWLFIFTTLYLT 940  Burkholderia pseudomallei Pasteur

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