1FFQ,3B9A


Conserved Protein Domain Family
E_set_Chitinase_N

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cd02848: E_set_Chitinase_N 
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N-terminal Early set domain associated with the catalytic domain of chitinase
E or "early" set domains are associated with the catalytic domain of chitinase at the N-terminal end. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and belong to families 18 and 19 of glycosyl hydrolases based on sequence criteria. The N-terminal domain of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others.
Statistics
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PSSM-Id: 199880
Aligned: 17 rows
Threshold Bit Score: 101.282
Created: 1-Jul-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1FFQ_A        3 PGKPTIAwg---nTKFAIVEVDQaa---taYNNLVKVKNAADVSVSWNLWNGDtgTTAKVLLNGkEAWSGPst-----gs 71   Serratia marces...
3B9A_A        2 PTAPSIDmygsnnLQFSKIELAMett--sgYNDMVKYHELAKIKVKFNQWSGTsgDTYNVYFDGvKVATGAit-----gs 74   Vibrio harveyi
P32823       23 PSTPTLDwq---pQQYSFVEVNVdgl--gsYKQLVKAKDVVDISIKWNAWSGSggDNYKVYFDDlLVNQGSlpa---gtk 94   Alteromonas sp....
BAA78114     23 PATPSVDclw-vrIIYSFLKLNKpwkarlvITKLVKYYDQAPIAVRFNQWSGTtgNRYKIYFDGaQVATGPit-----gs 96   Listonella angu...
AAT81212     27 PGAPTIEwm---eTSFAIIEVDEaa---taYEQLVTINDYAEVPVAWSKWSGDpaTTAQYLLNGeVVLEQSvsgt--gtq 98   Microbulbifer h...
YP_204981    26 PGQAIISwm---eTDFSIIEIDQaa---tsYKSLVTVKDFAEVPVTWDRWSGEsaEKWRVLLNGvVVHEESvspaasqka 99   Vibrio fischeri...
ZP_01898217  27 PQAPSIAwa--dySKLGFITINTdav--vsYKDMYTRVDVVEVPVSWNVWSGDkaTKWEVEVNGeIMMSGSgt-----gk 97   Moritella sp. PE36
ZP_02909764  47 PGKPSLKqyeitsQPHGFVEVDLqkagvapYKDIVKLNKKVDVPLPFDIWSNGtaVKAVAMVDG-VVDPASevr---mtp 122  Burkholderia am...
ZP_02961425  26 PGKPTIQwm---dNTYSIVEINPne---dkYELLVTRKEAATFNVSWDLWYGDygTTAKVYLNDqEVWSGPst-----ss 94   Providencia stu...
ZP_06052336  27 PGAPTISwm---eTNFSIIEVNDaa---taYKDLVVVKPYAEVPVTWDRWSGEpgDTWRVLLNGdVVHEAAvtpaasqke 100  Grimontia holli...
1FFQ_A       72 SGTANFKVn----kGGRYQMQVALCNa----dGCTASD-ATEIV 106  Serratia marcescens
3B9A_A       75 QTTASFEYg----qGGLYQMEIEACDa----tGCSKSA-PVEIT 109  Vibrio harveyi
P32823       95 SGVVQFPYt----kSGRHQLYLELCEg----tVCARSA-GKEIV 129  Alteromonas sp. O-7
BAA78114     97 QTTANFSYa----qGGVYQMAIELKLa----tGCSKSA-PVEIT 131  Listonella anguillarum
AAT81212     99 TGTATLQVa----eGGQYSLQVALCNd----dGCATSE-AKDIV 133  Microbulbifer hydrolyticus
YP_204981   100 STTLQVRQ------GGQYEMTVQLCNgsgateECSTSA-AKSIV 136  Vibrio fischeri ES114
ZP_01898217  98 STVLSFTE------GGLKDMVVRLCNa----dGCSESA-TTELL 130  Moritella sp. PE36
ZP_02909764 123 GGTQSGQVvaniktPGVKKMQVRVIDa----nGASTDSaPLDVV 162  Burkholderia ambifaria MEX-5
ZP_02961425  95 SGQASLSIs----kGGKYKLKVALCNg----dECNFSD-VVEIT 129  Providencia stuartii ATCC 25827
ZP_06052336 101 STILHVTK------GGKYDMVVELCSgtgaaqSCTQSE-PKPIV 137  Grimontia hollisae CIP 101886
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