2BGG,1YTU,1YVU,1Z25


Conserved Protein Domain Family
Piwi-like

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cd02826: Piwi-like 
Click on image for an interactive view with Cn3D
Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Statistics
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PSSM-Id: 239208
Aligned: 16 rows
Threshold Bit Score: 234.589
Created: 29-Aug-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site5' RNA guide
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:Based on the structure of Argonaute and comparison to the RNase H active site.
  • Structure:1YVU_A; Aquifex aeolicus Argonaute protein binds divalent ion Ca++; defined at 3.5A contacts.
  • Structure:1Z25_A; Pyrococcus furiosus Argonaute protein binds divalent ion Mn2+; defined at 3.5A contacts.
  • Comment:Some members of this family lack the canonical catalytic residues and are most likely unable to cleave the nucleic acid chain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
2BGG_B      12 TYRIGNGASVPISNTgelik---------------glrnyGPYEVPSlk----------ynQIALIHNNqfs-------- 58   Archaeoglobus fu...
1YTU_A      12 TYRIGNGASVPISNTgelik---------------glrnyGPYEVPSlk----------ynQIALIHNNqfs-------- 58   Archaeoglobus fu...
1YVU_A     321 TVLDAKGKNTKVITNlrkf-----------------lelcRPFVKKDv------------lSVEIISVSvykk-----le 366  Aquifex aeolicus...
1072148    555 VSEIDGERVLAPSVAyadpvhvdd-------ekrdwkaqdKKFVTPAtid---------hlMFVLVAGYtrtwdadcdat 618  Caenorhabditis e...
2315370    443 APESVTGLVLPKPDIyfsggkkvfwndpkkrgpatdfmpaGTFIKPTkl-----------tNWEVVFDNgvqlv---dci 508  Caenorhabditis e...
14573843   470 DPVNLEGMVLPKPKIafagnqladlanpksrfptdfnragQYYDAKEl------------tKWELVFVQneevq---gla 534  Caenorhabditis e...
NP_060538  559 DVHKIEGRVLPMERInlknts--------------fitsqELNWVKEvtrdp----siltiPMHFWALFyp--------- 611  human
NP_036286  392 PYVREFGIMVKDEMTdv----------------------tGRVLQPPsilyggrnkaiatpVQGVWDMRnkqfht-giei 448  human
CAE61598   410 KQLELRGIVLKKPKIvfrn------------------gsaQTFLQPVsl-----------kKWTVVFVRkeeve---dlv 457  Caenorhabditis b...
CAE62330   436 EPTTLKGIVLNKPTIkfstpnpvafd----arvptdfkinGKFVMPAkm-----------dNWEVVFMRneevr---dft 497  Caenorhabditis b...
Feature 1                                                                                      
2BGG_B      59 slINQLKSQISSKIdevwh--ihninISEFIYDsph------------------------fdSIKSQVDNAidt----gv 108  Archaeoglobus fu...
1YTU_A      59 slINQLKSQISSKIdevwh--ihninISEFIYDsph------------------------fdSIKSQVDNAidt----gv 108  Archaeoglobus fu...
1YVU_A     367 wrKEEFLKELINFLknkgi---klkiKGKSLILaqtr---------------------eeakEKLIPVINKik-----dv 417  Aquifex aeolicus...
1072148    619 kfVAKAFMQRCKDKgm---------hIGSYSMDqhnge-------------------rgsenFLTSVFKNLvthpnyrds 670  Caenorhabditis e...
2315370    509 qhLTSTMRQLGMEVsn---------pTVSLINRg----------------------------YLRSIFENAkaa----nr 547  Caenorhabditis e...
14573843   535 kqLADEMVNNGMKCsn---------pTMSFIIRg----------------------------DLEPIFKKAkaa----gt 573  Caenorhabditis e...
NP_060538  612 krAMDQARELVNMLekiagpigmrmsPPAWVELkdd-----------------------rieTYVRTIQSTlgae--gki 666  human
NP_036286  449 kvWAIACFAPQRQCte--------vhLKSFTEQlrkisrdagmpiqgqpcfckyaqgadsvePMFRHLKNTya-----gl 515  human
CAE61598   458 emLLEQWNQHGMEIay---------pNVDWMGQd---------------------------nNLEVVFHKAqkr----ek 497  Caenorhabditis b...
CAE62330   498 krISQAMGQCGMAVqp---------pVVSFINSg---------------------------gDLPNLFEKArss----kr 537  Caenorhabditis b...
Feature 1                                                                                      
2BGG_B     109 DGIMLVLPEynt-------plYYKLKSYLIns----iPSQFMRYDIlsn-------------rnlTFYVDNLLVQFVSKL 164  Archaeoglobus fu...
1YTU_A     109 DGIXLVLPEynt-------plYYKLKSYLIns----iPSQFXRYDIlsn-------------rnlTFYVDNLLVQFVSKL 164  Archaeoglobus fu...
1YVU_A     418 DLVIVFLEEypkvdpyksfllYDFVKRELLkk---xiPSQVILNRTlkn-------------enlKFVLLNVAEQVLAKT 481  Aquifex aeolicus...
1072148    671 SFTPFVLFIsddv-----pniHECLKFEERms---diPTQHVLLKNvkkmrdniekksqggrrayDLTLDNIVMKANIKC 742  Caenorhabditis e...
2315370    548 QLIMFITKSmn--------nyHTEIKCLEQef---dlLTQDIRFETavkl------------aqqQNTRKNIIYKTNMKL 604  Caenorhabditis e...
14573843   574 QLLFFVVKSry--------nyHQQIKALEQky---dvLTQEIRAETaekv------------frqPQTRLNIINKTNMKL 630  Caenorhabditis e...
NP_060538  667 QMVVCIIMGprd-------dlYGAIKKLCCvqs--pvPSQVVNVRTigqp------------trlRSVAQKILLQINCKL 725  human
NP_036286  516 QLVVVILPGkt--------pvYAEVKRVGDtvl--gmATQCVQMKNvqr--------------ttPQTLSNLCLKINVKL 571  human
CAE61598   498 QLLPFVTHSr-----------YALRKDIEWmehkyriPSLAIDLKIarkm------------vedKAVKLDLADQVNKKT 554  Caenorhabditis b...
CAE62330   538 QLLMFVFRRsv--------plHAQIKSLEQkf---diLTQEITLETaeki------------frqPQTLQNIVNKTNMKL 594  Caenorhabditis b...
Feature 1                                # #                                                   
2BGG_B     165 GGKPWILNvdp-----ekGSDIIIGTGATridn----vnlfCFAMVFKKD---------GTMLWNEISPIvtsseyltyl 226  Archaeoglobus fu...
1YTU_A     165 GGKPWILNvdp-----ekGSDIIIGTGATridn----vnlfCFAXVFKKD---------GTXLWNEISPIvtsseyltyl 226  Archaeoglobus fu...
1YVU_A     482 GNIPYKLKei------egKVDAFVGIDISritrdgktvnavAFTKIFNSK---------GELVRYYLTSYpafg--eklt 544  Aquifex aeolicus...
1072148    743 GGLNYTADiprdlacwneVSTFVIGMDVAhpdrna-aregnPSTVGLSCNsaenpysfiGDFLYTDPRREai-------q 814  Caenorhabditis e...
2315370    605 GGLNYELRsgv----fsnSKRLIIGFETSqrgg----lgdaPIAIGFAANmmshsqqfaGGYMFVKKSADn--------y 668  Caenorhabditis e...
14573843   631 GGLNYAIGsea----fnkPNRLIVGFVTSqrvgg---npdyPISVGFAANmlkhhqkfaGGYVYVHRDRDv--------f 695  Caenorhabditis e...
NP_060538  726 GGELWGVDip-------lKQLMVIGMDVYhdps-----rgmRSVVGFVASin-----ltLTKWYSRVVFQmph----qei 784  human
NP_036286  572 GGVNNILLpqgrp-pvfqQPVIFLGADVThppagdgkkpsiAAVVGSMDAhpn----ryCATVRVQQHRQeii----qdl 642  human
CAE61598   555 QGVNYAIYsdv----frnGNDLVISISFSepspk---yakyPFTVGFAANtsnhplvftSEFLYSNSDNMdsg----avl 623  Caenorhabditis b...
CAE62330   595 GGLNYRIDstv-----lnPNILFIGFETSskgg----agdgPVSIGFAANmmqnhqqfaGGYIYAPQARDtyg----svv 661  Caenorhabditis b...
Feature 1                                     #                                                
2BGG_B     227 KSTIKKVVYGFKKSNpd----wdVEKLTLHVSGKrpkmkDGETKILKETVEELkkqem--------vsrdVKYAILHLNE 294  Archaeoglobus fu...
1YTU_A     227 KSTIKKVVYGFKKSNpd----wdVEKLTLHVSGKrpkxkDGETKILKETVEELkkqex--------vsrdVKYAILHLNE 294  Archaeoglobus fu...
1YVU_A     545 EKAIGDVFSLLEKLGfk-----kGSKIVVHRDGRl---yRDEVAAFKKYGELYg----------------YSLELLEIIK 600  Aquifex aeolicus...
1072148    815 DEILRKFTDQSVRNFaei--rgfPKKVIIFRDGVs----FGEETAALKEVEIIeqtiktaaksmghsdyaPKVLAIVVKK 888  Caenorhabditis e...
2315370    669 GPVIPEILLTILKQAkanrpndrPDELLIYFSGVs----EGQHALVNEYYANQvkaacgl----fnesfrPHITLILASK 740  Caenorhabditis e...
14573843   696 GSIIKDTLLAIFKTCteq--rgrPDDILLYFNGVs----EGQFSMINEEFSARvkeacmafqkegtppfrPHITIIASSK 769  Caenorhabditis e...
NP_060538  785 VDSLKLCLVGSLKKFyevn-hclPEKIVVYRDGVs----DGQLKTVANYEIPQlqkcfe-----afenyqPKMVVFVVQK 854  human
NP_036286  643 AAMVRELLIQFYKSTrf-----kPTRIIFYRDGVs----EGQFQQVLHHELLAireacik----lekdyqPGITFIVVQK 709  human
CAE61598   624 TEIFYKCLTGTRKNRge-----lPTRLIIYLDEVp----EEEFWRIDHHYEPScaeacsq----mgaeynPQTTMIVATQ 690  Caenorhabditis b...
CAE62330   662 GPVLKQILGVVRRNRkd-----pPQEIIMYFNGVt----EGQYGLINEVYSEEikktima----ikadwrPRLMIIATSK 728  Caenorhabditis b...
Feature 1                                                                                      
2BGG_B     295 t--HPFWVMgdpnnr----fhpyeGTKVKLss-----kRYLLTLLqpylkrnglemvtpiKPLSVEIVSDnwtse-eyyh 362  Archaeoglobus fu...
1YTU_A     295 t--HPFWVXgdpnnr----fhpyeGTKVKLss-----kRYLLTLLqpylkrnglexvtpiKPLSVEIVSDnwtse-eyyh 362  Archaeoglobus fu...
1YVU_A     601 rnnPRFFSNekf----------ikGYFYKLse-----dSVILATYnqvy-------egthQPIKVRKVYGe--------l 650  Aquifex aeolicus...
1072148    889 rhhTRFYAKgghhgnmpinplpdtSVGGDIaey--gkrQIFIQAFrpvq--------gtaKVPSFLVIRDdee----vsd 954  Caenorhabditis e...
2315370    741 vhnTRVYKSengggv----cnvepGTVIDHtivspvlsEWYHAGSlarq--------gtsKLVKYSLIFNtkkn---ekl 805  Caenorhabditis e...
14573843   770 ahnERLYKSdkgri-----vnlepGTVVDHtivsnvytEWYHASAvarq--------gtaKATKFTLIFTtkagpqaepl 836  Caenorhabditis e...
NP_060538  855 kisTNLYLAapqnf-----vtptpGTVVDHtitscewvDFYLLAHhvrq--------gcgIPTHYVCVLNtan----lsp 917  human
NP_036286  710 rhhTRLFCTdknervg-ksgnipaGTTVDTkithptefDFYLCSHagiq--------gtsRPSHYHVLWDdnr----fss 776  human
CAE61598   691 khnERFYKIddkcli----wnpepGTIIDHtav---spVFNEFYHigpsts----ykstvKPAKYTVVYAsdp----vdm 755  Caenorhabditis b...
CAE62330   729 ahnERFYQLeknkav----snlapGTVIDHtvvspvfsEFYLASAvarq--------gtaKATKYTIIFAtnpe---anl 793  Caenorhabditis b...
Feature 1                                      #        
2BGG_B     363 NVHEILDEIYYLSKMNwrgfrsrnLPVTVNYPKLVAGIIAN 403  Archaeoglobus fulgidus
1YTU_A     363 NVHEILDEIYYLSKXNwrgfrsrnLPVTVNYPKLVAGIIAN 403  Archaeoglobus fulgidus DSM 4304
1YVU_A     651 PVEVLCSQILSLTLXNyssfqpikLPATVHYSDKITKLXLR 691  Aquifex aeolicus VF5
1072148    955 EHVAKMVCAVCSLHQLvns--ptsIPTPVYVAHELAKRGTG 993  Caenorhabditis elegans
2315370    806 SVYERLTNELCYEMQIvfh--ptsLPIPLHIAGTYSERGSQ 844  Caenorhabditis elegans
14573843   837 WHLEQLTNDLCYDHQIvfh--pvgLPVPLYIADRYSQRGAM 875  Caenorhabditis elegans
NP_060538  918 DHMQRLTFKLCHMYWNwpg--tirVPAPCKYAHKLAFLSGH 956  human
NP_036286  777 DELQILTYQLCHTYVRctr--svsIPAPAYYAHLVAFRARY 815  human
CAE61598   756 EHLEQLTNDLCYWNQLkse--linVPAPLDMAQKEASKGIQ 794  Caenorhabditis briggsae
CAE62330   794 ARIETITNDLCFDHQIvfq--pvsLPVPLFIAGRCSQRGAA 832  Caenorhabditis briggsae

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