2DOR,1EP2,1EP3,1F76,1GTE,1UUO,2B4G


Conserved Protein Domain Family
DHOD_DHPD_FMN

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cd02810: DHOD_DHPD_FMN 
Click on image for an interactive view with Cn3D
Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Statistics
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PSSM-Id: 239204
Aligned: 15 rows
Threshold Bit Score: 244.186
Created: 20-May-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1GTE; Sus scrofa DPD binds FMN and 5-iodouracil
  • Structure:2DOR; Lactococcus lactis DHODA binds FMN and orotate
  • Structure:1EP2; Lactococcus lactis DHODB binds FMN and orotate
  • Structure:1F76; Escherichia coli DHOD binds FMN and orotate

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                  #                                     
2DOR_A         4 TTFANAKFANPFMNASGVhc--mTIEDLEELKasqaGAYITKSstle-kreGNPL-PRYVDle----------------- 62   Lactococcus la...
1F76_A        47 VNCXGLTFKNPLGLAAGLd---kDGECIDALGaxgfGSIEIGTvtpr-pqpGNDK-PRLFRlvd---------------- 105  Escherichia coli
1GTE_D       535 VEMAGLKFINPFGLASAApt--tSSSMIRRAFeagwGFALTKTfsldkdivTNVS-PRIVRgttsgpm------------ 599  pig
1UUO_A        57 VKVLGHKFRNPVGIAAGFd---kNGEAVDGLYklgfGFVEVGSvtpq-pqeGNPR-PRVFRlpe---------------- 115  black rat
2B4G_D         9 VNILGHEFSNPFMNAAGVlc--tTEEDLRRMTesesGSLIGKSctla-prtGNPE-PRYFGlp----------------- 67   Trypanosoma br...
P07670        44 IDFLGQKLASPIGVPAEPllnsqWVKFALVAGf---DLPTYKTirsh-ehfGHPV-PNVMYldlesedkqftksdsgstl 118  Dictyostelium ...
ZP_00121226   48 ASFLGQPVNLPFGIPAGPllnsrFTTAAFRMGf---DLATYKTvrsr-awgCNPF-PNVLAvhpkaadgsltpgsae-ld 121  Bifidobacteriu...
AAV88744      62 VSFLGCSVDLPFGIPAGPll--nSRYIKAAFHag-fDLCVYKTvrtq-ehkSHPL-PNVLAihpegvlsadce------- 129  Zymomonas mobi...
ZP_00628379    6 VQVGRTRLKNPVIAASGEhliddAGILSAIAAg--aGAVVMKSsndsaaaqRQLLqAEYAAldacwnrvd---------- 73   Paracoccus den...
ZP_01301399   40 VSFLGYSLASKIGVAACAv---tTGKGIALLAqlgfDILTYKTirck-aypTHPL-PNIVPiqvdkqfdysdlde----v 110  Rickettsiella ...
Feature 1                        #                                                               
2DOR_A        63 ------------lGSINsmGLPnl----gfDYYLDYVLknqken----aqegpIFFSIAgm-------saAENIAMLKKI 115  Lactococcus la...
1F76_A       106 -----------aeGLINrxGFNnl----gvDNLVENVKkahy--------dgvLGINIGknkdtpveqgkDDYLICXEKI 162  Escherichia coli
1GTE_D       600 -------ygpgqsSFLNieLISek----taAYWCQSVTelkad-----fpdniVIASIMcsy------nkNDWMELSRKA 657  pig
1UUO_A       116 -----------dqAVINryGFNsh----glSVVEHRLRarqqkqaqltadglpLGINLGknkts--edaaADYAEGVRTL 178  black rat
2B4G_D        68 ------------lGSINsmGLPnl----gvDFYLSYAAqthdy------srkpLFLSMSgl-------svEESVEMVKKL 118  Trypanosoma br...
P07670       119 hatqtipttidqlAITNsfGMPsm----gkEYLYKGITlahsyl----gsgqsMIVSITgt-------asSAHDFLQDLL 183  Dictyostelium ...
ZP_00121226  122 egvladtnyetpiSISNsfGVPsq----spDAWQPDMRaaieaa----gpgqvLVPSFQgsrve--gmseEEYIADHATT 191  Bifidobacteriu...
AAV88744     130 -avladtrynqplSITNsfGVPsf----npDIWQPDMAeavkaa----sdhqvMIGSFQgtr------gkGKIEEDYALA 194  Zymomonas mobi...
ZP_00628379   74 ----wgpgapreaTLLTrsGLTplgfdawlDQARRMDAaark-------adcvLVASVVma-------giEDAVRRARAV 135  Paracoccus den...
ZP_01301399  111 vstkkiieinnkiAISNsfGNGcl----epRVVMQDIAfsksal----vdgqvLIVSVYgeg-----hslSAMSQDFMTA 177  Rickettsiella ...
Feature 1                       #  #                                              #              
2DOR_A       116 qesd----fsgITELNLSCPNvpgkpq----laydfeATEKLLKEVFtff---------tkPLGVKLPPYFdlvhFDIMA 178  Lactococcus la...
1F76_A       163 yay------agYIAINISSPNtpglrt-----lqygeALDDLLTAIKnkqndlqaxhhkyvPIAVKIAPDLseeeLIQVA 231  Escherichia coli
1GTE_D       658 eas-----gadALELNLSCPHgmgergmglacgqdpeLVRNICRWVRqav---------qiPFFAKLTPNVt--dIVSIA 721  pig
1UUO_A       179 gpl------adYLVVNVSSPNtaglrs-----lqgktELRHLLSKVLqerdal--kgtrkpAVLVKIAPDLtaqdKEDIA 245  black rat
2B4G_D       119 vpitk--ekgtILELNLSCPNvpgkpq----vgydfdTTRTYLQKVSeay---------glPFGVKMPPYFdiahFDMAA 183  Trypanosoma br...
P07670       184 irfvcmcagakMVEVNYSCPNvvtgegq---iyhnpdAVYEISSTLVkels------skniPLIIKVGVMDdlekMEGLL 254  Dictyostelium ...
ZP_00121226  192 arlvk-etgakLMVMNTSCPNeghnrl----lchnplLVGRITEAVKqei--------gdiPLMVKLAYIPsddvLELMV 258  Bifidobacteriu...
AAV88744     195 armva-etgapVLEANLSCPNegvnsl----lcfdapLVQKIVEAIKaav--------pdrPLLIKTAYFKdnakLADLV 261  Zymomonas mobi...
ZP_00628379  136 eda-----glrVFEFNIGTPYasqaakgavstelspaRVAELVGQVTsav---------siPVWVKLSGQSe--rVPELV 199  Paracoccus den...
ZP_01301399  178 almak-eagadIIELNFSCPNlmksdep---lyrnmdCVSQITTRVVkcv--------gdiPLLLKIGFIHehefPLKLL 245  Rickettsiella ...
Feature 1                      ###                             #                               # 
2DOR_A       179 EILNqf-plTYVNSVNSignglfidpea---esvvikpkdgfGGIGGAyiKPTALANVRAFYTRlk---peIQIIGTGGI 251  Lactococcus la...
1F76_A       232 DSLVrh-niDGVIATNTtldrslvq---------gxkncdqtGGLSGRplQLKSTEIIRRLSLEln---grLPIIGVGGI 298  Escherichia coli
1GTE_D       722 RAAKeg-gaDGVTATNTvsglmglkadgtpwpavgagkrttyGGVSGTaiRPIALRAVTTIARAlp----gFPILATGGI 796  pig
1UUO_A       246 SVARel-giDGLIVTNTtvsrpvgl---------qgalrsetGGLSGKplRDLSTQTIREMYALtq---grIPIIGVGGV 312  black rat
2B4G_D       184 AVLNdfplvKFITCVNSignglvidpan---etvvikpkqgfGGLGGKyvLPTALANVNAFFRRcp----dKLVFGCGGV 256  Trypanosoma br...
P07670       255 QQAEra-gvAAIAGINTlsmkvtdkitg----epslgasrltSGVCGApiRSAALDWVSTASSIikkqnskLKLLGCGGI 329  Dictyostelium ...
ZP_00121226  259 RSTVghgtvQGFSTINTisaklvdangn----qalpgagrdrSGVCGNaiRGAGLDMVARLAAIreklgldFAINGVGGV 334  Bifidobacteriu...
AAV88744     262 SRVGhl--vSGFSTINTlsarpldekg-----qaalspsrpeGGVCGDaiRWAGLEMVQRLAAFreeksldYAIVGVGGV 334  Zymomonas mobi...
ZP_00628379  200 AAATga-gaDSAVIAGRalglvpdle-------tmqpmlgtsCGIGGYwnLPLTCHWLAMTRARlg---agRALIGINGA 268  Paracoccus den...
ZP_01301399  246 ISAAra-gvRGISAINSismrvlnqnh------rpafgkriySGISGYpiRRLALQSVKKLTQInqkeklnLTIVGMGGI 318  Rickettsiella ...
Feature 1                           ##                
2DOR_A       252 etGQDAFEHLlcGATMLQIGTALHKegPAIFDRIIKE 288  Lactococcus lactis
1F76_A       299 dsVIAAREKIaaGASLVQIYSGFIFkgPPLIKEIVTH 335  Escherichia coli
1GTE_D       797 dsAESGLQFLhsGASVLQVCSAVQNqdFTVIQDYCTG 833  pig
1UUO_A       313 ssGQDALEKIqaGASLVQLYTALIFlgPPVVVRVKRE 349  black rat
2B4G_D       257 ysGEEAFLHIlaGASMVQVGTALHDegPIIFARLNKE 293  Trypanosoma brucei
P07670       330 dkPEHFDDFLnsGADIAMSAIGLMWd-PYIAMKWHNN 365  Dictyostelium discoideum
ZP_00121226  335 vsPADYQAYRdaGADSVMSATGAMWd-AELAHKIKAS 370  Bifidobacterium longum DJO10A
AAV88744     335 nkPEHYKAYIeaGANAVMTATGSMWn-PHLAEETKKF 370  Zymomonas mobilis subsp. mobilis ZM4
ZP_00628379  269 csGRDVARMMlaGASAVGLSSAVMLrgWDVIRDAVAD 305  Paracoccus denitrificans PD1222
ZP_01301399  319 tvAEHFDEFFdrGADAVLSATGVMWn-PYLAMQFHQQ 354  Rickettsiella grylli

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