1KQF,1H0H


Conserved Protein Domain Family
MopB_CT_Formate-Dh-Na-like

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cd02792: MopB_CT_Formate-Dh-Na-like 
Click on image for an interactive view with Cn3D
Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Statistics
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PSSM-Id: 239193
Aligned: 32 rows
Threshold Bit Score: 162.008
Created: 1-Jun-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
molybdopterin
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:molybdopterin cofactor binding site
Evidence:
  • Structure:1KQF; Molybdenum containing E. coli formate dehydrogenase N binds Mo and 2 molybdopterin guanine dinucleotide (MGD) units.
  • Structure:1HOH; Tungsten containing formate dehydrogenase from Desulfovibrio gigas binds W and two molybdopterin guanine dinucleotide (MGD) units.
  • Comment:defined by 3.5 Angstrom contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                ##### ####                                                              
1KQF_A       886 EQFPYVGTTYRLTEHFHTw--TKHALLNAIAQPEQFVEISETLAAAKGINNGDRVTVSSKRG--FIRAVAVVTRRLKpln 961  Escherichia coli
ZP_00194870  834 NSFPIILTSGRLVEYEGGgeeTRSNRWLAELQQEMFVEINPADAAERGISDGAWVWVNGAENnaKARVRALVTERVGk-- 911  Mesorhizobium ...
NP_720033    812 GKYPLVMTSGRLVEYEGGgeeSRCNPWLAELQQEMFIEISPADAADRAIRNGEFVWVEGAEGg-RIKVQAMVTPRVAp-- 888  Shewanella one...
CAG36498     791 KEFPYILTTGRQVEHMGAgaeTRSNQYLAELQPEMYAEINPRLANNLGIRKDAMIWIESPEGg-KIKVKAFVTERVDe-- 867  Desulfotalea p...
AAV46264     955 PDLDTIMTSGRQVEHQGGgaeTRNNIHTADLQPHMYAEITPNKAEELGIDGGDLVVISSTDRg-SVLVKARVTDRPNd-- 1031 Haloarcula mar...
AAB80862     824 EEYDLHINNGRMLEHFHEgnmTNKSKGIQAKVPNVFVEISPELAQERGVCDGSLVRLVSPFG--AVKLNALITDRVRk-- 899  Bacillus subtilis
NP_393903    837 QEFDLHLNNGRILEHFHEgneTYRSPGLKEKVPGTFVEVSPELAAERGLKDGDLVRITSKWG--SIKVRVLVTDRVSg-- 912  Thermoplasma a...
NP_344144    817 EVHKVTVNTGRVLEHFHVgnmTRRVEGLRRKVPETFVEVSKELASKYSIKNGDLVLVKSKFGg-EIKARAIVSDRVEg-- 893  Sulfolobus sol...
ZP_00397512  821 ADYDLHLNNGRMLEHFHEgnmTFKSAGITEKVPGTFVEVSPELAHARGLESGRLVRLVSRHG--AVRVRVLVTDRVEg-- 896  Deinococcus ge...
NP_466109    819 EEYNLTLNNGRLLEQFHEgnlTDKSKGLDYKLPEVFVEVSHELAKERDLESGSLVRLSSPYG--RIKLRAVVTDRMKg-- 894  Listeria monoc...
Feature 1                    #                            #               ##        
1KQF_A       962 vngqqveTVGIPIHWGFegv--------------arkGYIANTLTPNVGDAnsQTPEYKAFLVNIEK 1014 Escherichia coli
ZP_00194870  912 ------gVAFMPFHFGGwfqgqdlranypqgtdpyvlGESANTITTYGYDPvtGMQEPKVTLCQIAA 972  Mesorhizobium sp. BNC1
NP_720033    889 ------gVTFMPYHFAGvmhgeslaanypegtvpyviGESCNTALTYGYDPvtQMQETKASLCQIVK 949  Shewanella oneidensis MR-1
CAG36498     868 ------kTIFLPYHFGGswegeslvdkypeghapwvvGDSANVVVNYGYDIvtQIQATKDGLCKISL 928  Desulfotalea psychrophila L...
AAV46264    1032 ------rEVFLPYHWGGvfkgesledkypdghvpyaiGDSANAITSRGYDVetQMQETKVSMVAVNP 1092 Haloarcula marismortui ATCC...
AAB80862     900 ------nELYLPMNSTDk-------------------ESAINFLTGPAADKrtNTPAYKQTKVRMEV 941  Bacillus subtilis
NP_393903    913 ------kELYMPMNSGG--------------------DSAVNNLTSRLMDPtaHTPAYKELPVKMEK 953  Thermoplasma acidophilum DS...
NP_344144    894 ------eEIFIPLYASDp-------------------SKGVNNLTGLVIDKasGTPGYKDTPVVIEK 935  Sulfolobus solfataricus P2
ZP_00397512  897 ------kQLYMPMNTPDa-------------------RQAVNRLTGSHTDLstHTPAYKDTAVRMEI 938  Deinococcus geothermalis DS...
NP_466109    895 ------nEVYVPMHSVSs-------------------ETAVNLLTSSAGDVrtKTPAYKQTKVNLTV 936  Listeria monocytogenes EGD-e

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