Conserved Protein Domain Family
MopB_Res-Cmplx1_Nad11-M

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cd02774: MopB_Res-Cmplx1_Nad11-M 
MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to the molybdopterin_binding (MopB) superfamily of proteins.
Statistics
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PSSM-Id: 239175
Aligned: 9 rows
Threshold Bit Score: 257.68
Created: 29-Apr-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAU00611  227 PGVDVFDPLLSSINFQvkgaaIMRILPKindELNEEWLTDKMRFHYDSYKvmnetRLNFPKLKlknn--------kyiTL 298 Polysphondylium pa...
NP_050104 227 KGIDIFDTLLTPINYQvkggeIFRILPRindRINEEWITDKVRFHYESYKiiekiRKETPSYKiqan--------kfiEL 298 Dictyostelium disc...
AAG17786  221 ESIDVLDSLHSNIRVDikgsrILRILPKineQLNENWISDYTRFSYESVQg---fRIKYPYLSlnksffsfldfdlflRL 297 Naegleria gruberi
YP_052882 220 EGIDILDAIGSNLNIDtlknnIVRILPKtnvNINKEWINNKTRFFFDSLKy---qRITKPLIKtse---------gfkEI 287 Saprolegnia ferax
AAF24792  219 EGVDILDSIGSNIKIDifnneIVRILPKtnfNINKEWISNKTRYFFDSLKy---qRLKYPLLKdden--------nfhKI 287 potato late blight...
AAG17767  221 RSVDVFDGFGSNIRIDsrnleILRILPFkndFVNEEWISDKIRFGFDTLKr---qRLNKPLLKlen---------nffQV 288 Rhodomonas salina
Q37373    221 NSIDVLDSLHSNIRVDirgtkIMRILPRvnsELNEDWITDKIRFSYDSFRr---qRLYDPMVKisg---------sflKI 288 Acanthamoeba caste...
AAF36936  219 ETIDCTDGFGSNILVNfketdILRIQPKisnSLNLSLISDKIRFLHDGILk---nRIKQIFLKdlnes-----yreldLI 290 Chrysodidymus synu...
AAG18378  219 DSIDVTDSIGSNIYVNykennIIRILPKsnsEINDIIISDKARFCYDGNTy---sRIGTVYVKntvd-------nsytVS 288 Ochromonas danica
AAU00611  299 DWKNAIKLFFNLIFLyk--------nMNVIFgs-kiSYDILAFYKVFlnnlglkNYITENNLMINnfnydfr--enylnt 367 Polysphondylium pa...
NP_050104 299 TWKTALKMVFKVLLNkk-------nkVDLIIgs-kiNSTNLRIYKELmnrlgskNYITENGLMFKkfnydlr--enyins 368 Dictyostelium disc...
AAG17786  298 GWEQCIEFFNIFINLknf------nlFNFFIssgigLFNSSFYYFISk-----fIKNSNFFIESLpsfnids--rssyyi 364 Naegleria gruberi
YP_052882 288 SWEKVFQTIDNEILKrdp------sqIQSVVgn-ltDIESQFILKKNltqlginNISYLYANKKEnifnsdlc-snflfn 359 Saprolegnia ferax
AAF24792  288 SWLEALNIINKKLITtds------skIKGIIgd-ltDLESLFLLKKNlnklgilNINYERFLNNQnfkinsdltsnflfn 360 potato late blight...
AAG17767  289 AWGEIFNTLVEKILIckkn----nldLNFCVgp-fcDLKTVFFIKNLlki--snKFNSLLAFENYglceldfq-hyycfn 360 Rhodomonas salina
Q37373    289 GWKKAMLFIKKFFCNflgfnhssfipLRGYIgd-ylDLETIYTFKKFl-----lLNGSNFFLPSSsyndlta---lysfn 359 Acanthamoeba caste...
AAF36936  291 KFLTEFKILINNLSTsn-------ktLLFIVne-tiDLETIVKLNFLnnkkiqlVTKSNNFLSKNyyfnps----lfvks 358 Chrysodidymus synu...
AAG18378  289 TWKDLFLNLNSFVGKas-------skFVLFFne-diDLDTLIYIKKIkn---fiNTKISLFNINTiyknrnl---flqps 354 Ochromonas danica
AAU00611  368 nLFMNIe--KHDLLFLIGlNLRLEsPLLNIRLRSLNfnenq-dlnkKIVILGNKf-fWKKDSQyLGSKLNTLLNILEGRH 443 Polysphondylium pa...
NP_050104 369 nDLYNVd--KNDLVLLCGiNLRVEsPLLNIKLRNVNfgddeiesvkKIGIIGNKf-dWKHESEyIGATLNSMLKLFEGRL 445 Dictyostelium disc...
AAG17786  365 nSFNNFm--KSNYFLFYNlNLKENySVFNARMQSYLnnsf---ykkYIFYIGLNi-kHTYSVYhIGNSSSSFYSFLRGKN 438 Naegleria gruberi
YP_052882 360 sSLKNIe--NSDLCLILNsDIRSEgSILNIHLINRVqkg-----nfKIASIGPKy-dYTYPVDnLGLNINTLLQIIEGKH 431 Saprolegnia ferax
AAF24792  361 nTLKSIe--ESDLCLIIGsDIRKEgSILNIHLINRLkkg-----nfKIAYIGNKt-nFTYPIKhLGLTFKTLINIILGKH 432 potato late blight...
AAG17767  361 nKFQILdnpSLTSCFLIGvDPKREvPILNLKLRKRYlkg-----nfFVANFGTRl-nLTFPVFhLGLSCFNFFNLVSGNN 434 Rhodomonas salina
Q37373    360 tPLTRLd--EGDFCILLDvNLRVElPIVNSRIKQLVskk-----mlPVFVLGFYs-nFNYFVKhISNSSKTLLHVLEGSH 431 Acanthamoeba caste...
AAF36936  359 fLLDNL---KLKVCFIIGsNIKIEsTILNTKLRIKFnke-----kiKFYNLGLKttsTSFNSIfINLNLNKIIKGFEGKT 430 Chrysodidymus synu...
AAG18378  355 mQLSDVvnnIDELSIFLGcNLKLEaSILNARVKFKYknt-----flKNFVIGNTf-dTNIPSTfVCLNIVTFLKIIEGRC 428 Ochromonas danica
AAU00611  444 SFCKq---LIQSKNPLIFVGSSVsl-----ktNINIGRLKTFFSdylkikkenIMYFLNGVNNv----aAMELgi--fTS 509 Polysphondylium pa...
NP_050104 446 PYCQq---IKKSKAPLIIVGPSLlt-----riSLTLQEMRAIFMkacnlkpenILIITQGANF------GMALeeglfKE 511 Dictyostelium disc...
AAG17786  439 LNLNyfnsLVKKNISLNLFSSDInfn----syLSSLGIFDNLEIn--------NLNFYSNISG------YFDLgi--nSD 498 Naegleria gruberi
YP_052882 432 IFCKe---LKKAKNPTIIIGSNFfyqy--keaSFILNKFKNLSFln-----gkNFNILQTQTS------YLNFle-ifNK 494 Saprolegnia ferax
AAF24792  433 LFCKd---LKKAKKPLIILGENIinq---kngSFIFSKLKNLSFin------nNINFFNSQTS------LINFle-itFP 493 potato late blight...
AAG17767  435 SFCKi---LKRSKKKISIVGNSFfnvyseknhRFFISTFLKNSGlv-----nsEFFGLNILSNraadgsLYALgl--kTK 504 Rhodomonas salina
Q37373    432 WLSAki-sKKFSSKPIFLIGDSSsl-----lkGSLIVPLFNFTNvi-----cdNWNGLNIISNd-----SSYLst--kEF 493 Acanthamoeba caste...
AAF36936  431 EISLk---IFEFASPLIIFGNSLkkri--knmMYVISLLKKISSt-------sIFFNVNLNSNse---gVYYLgl--kNL 493 Chrysodidymus synu...
AAG18378  429 IQISq--nFFRSVTCFIFIGKAFadri--ktlNNIINFIKNFYPn-------iFISEISISSNsd---gLRWLgi--nKF 492 Ochromonas danica
AAU00611  510 NFQNKKsdli--------yliDSNEFki--------qNKNAFiIYQGIl---NSYLqn--niNLYLPSKFY---FEEKAE 565 Polysphondylium pa...
NP_050104 512 KFSIGGnvl---------ysiDSNEVqv--------tNKINYvIYQGIi---NDKFen--kiDLYLPSKHYfedFEGDRE 569 Dictyostelium disc...
AAG17786  499 LVNNHDllkqtd---lfsyyyKTNKVe----------NNNSFfIYHGNylplVENVseqnnnYVFLPSSNL---FEVEDS 562 Naegleria gruberi
YP_052882 495 KYNFENikts-------lfylYNTDFhknl----kneNKNNYyIYQGHh---FNMDaq--ksNLILPGLTF---LEKEGL 555 Saprolegnia ferax
AAF24792  494 KPRNSLnnfn-------lyylFNTNLqnk-----lkmSKNNFiIYQGHh---FTKDaq--nsNLILPGLTF---LEKNGM 553 potato late blight...
AAG17767  505 NVNKISkpsi-------lfiiGDTFFhk--------nNSKTFvCYQGIq---GNELvs--kaDLILPSNAF---TEKNAL 561 Rhodomonas salina
Q37373    494 NLSSSHsqnshllnfpinfvlNYDKAvl--------vDSSAFqIYQGHh---GDTNai--nsNLIFPSTSF---IEKNSF 557 Acanthamoeba caste...
AAF36936  494 SSKQLKnasnv------fyinLEDNFttrkiltnlnfLIKNF-WFNTHg--sSLALk----aNFIIPTQTF---FELENL 557 Chrysodidymus synu...
AAG18378  493 GSKKKRtgif--------lgiKETNFlqsi----aifFKDCF-LISSHk--tFLNLl----pGFILPAKTM---FESDYK 550 Ochromonas danica
AAU00611  566 YL-NLFGnLCESQafny-sikNTIKg-HKIISSVLLYL 600 Polysphondylium pallidum
NP_050104 570 VYmNTFGqRSEIEklsi-skgNKIKe-NSMIGYIQLMY 605 Dictyostelium discoideum
AAG17786  563 YI-NIFGdLQSVNqsqdfsekESIKs-DFYIFKNILFS 598 Naegleria gruberi
YP_052882 556 YI-NTEGlIQKNNtil--kikSLQKsdNNIFKFLYIFL 590 Saprolegnia ferax
AAF24792  554 YI-NLEGlIQKNDqil--nlnTEQRkdSIIYRNIYKFL 588 potato late blight agent
AAG17767  562 FV-NLEGrFQNSQksi--sspKNTKsdFDIIFNVLGVF 596 Rhodomonas salina
Q37373    558 YS-NSLAiVQKTKkil--fspGNSRddWKILNALIDNF 592 Acanthamoeba castellanii
AAF36936  558 YL-NNDRiLQKTKiil--nfkDNFNylDNILIILKDIM 592 Chrysodidymus synuroideus
AAG18378  551 YL-NIEHrPQSTKssii-nflESRKy-DTILKSLFNFP 585 Ochromonas danica
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