1KGY,3D12,2WO3


Conserved Protein Domain Family
Ephrin_ectodomain

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cd02675: Ephrin_ectodomain 
Click on image for an interactive view with Cn3D
Ectodomain of Ephrins
Ephrins and their receptors EphR play an important role in cell communication in normal physiology, as well as in disease pathogenesis. Binding of the ephrin (Eph) ligand to EphR requires cell-cell contact, since both molecules are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling, depending on Eph kinase activity) and ephrin-expressing cells (reverse signaling). Eph signaling controls cell morphology, adhesion, migration and invasion. Ephrins can be subdivided into 2 groups, A and B, depending on their respective receptors EphA or EphB. The nine human EphA receptors bind to five GPI-linked ephrin-A ligands and the five EphB receptors bind to three transmembrane ephrin-B ligands. Interactions are promiscuous within each class, and some Eph receptors can also bind to ephrins of the other class. All ephrins contain a highly conserved ectodomain for receptor binding, which is characterized by this domain hierarchy.
Statistics
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PSSM-Id: 259861
Aligned: 30 rows
Threshold Bit Score: 146.275
Created: 13-Dec-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
receptor
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:receptor binding site [polypeptide binding site]
Evidence:
  • Structure:1KGY; Mouse EphB2-EphrinB2 complex; contacts at 4A
  • Structure:2WO3; Human EphA4-EphrinA2 complex; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                          # #                                           
1KGY_E         3 LEPIYWNSSNSKFlpg-gglVLYPQIg------DKLDIICPKVdskt-vgqyEYYKVYMVDKD----------------Q 58  house mouse
NP_501955     21 IPDINWISSNPIFdvsntdhVISVHIg------DRVSIRCPKSdet---gkyEYSYIYMVSDE----------------E 75  nematode
ADY46049      17 MPDIYWNSTNQIFdisntdhVMSVKLl------DRVNIICPQPrttp-kmpyEYTKLYAVSRD----------------G 73  pig roundworm
XP_002435267  24 FCSFRIDNTDHIId------VNKGNIpf---eyDQVNIICPVYrtgtreedvEQYIIYNVSKE----------------E 78  black-legged tick
EFX72793      40 LSVFRIDNTDHIId------VNKNNIpf---eyDQVNIICPVYtpgtheddaEKYIIYNVSKE----------------E 94  common water flea
NP_651927    216 TFYMHWNTSNSIFridntdhIIDVNKgnlafefDQVHIICPVYepgtfenetEKYIIYNVSKV----------------E 279 fruit fly
EKC32286       9 MFAMMSDILFSQSn-----sEINVNLd------DSIDFRCPFYpsgtssssyKYYLVYIVTMD----------------E 61  Pacific oyster
ELU12166       1 MRFINHSLRFKASnn---dhVIEVNLy------DDIDFVCPHFedddsgnyeEYYLIHQVSKR----------------E 55  Capitella sp. I...
NP_510250     22 YHDVMWNSKQFPVafk--ttPIKVDLg------DQLTIICPKAygm----tyEYAKLYWVGET----------------E 73  nematode
XP_002645765  24 YHDVIWNSRFFPQhlk--hsPMNVRLg------DQLTIICPKSfhrg--mhyEYAKLYWVSQKlvrmkkktfifqvgkqD 93  Caenorhabditis ...
Feature 1                    ###    #     ### # # ####  ###                                      
1KGY_E        59 ADRCTikk--enTPLLNCARPdqdVKFTIKFQEFSPNLwGLEFQKNKDYYIISTSNGslegldnqeggvcqtraMKILMK 136 house mouse
NP_501955     76 YDHCFls---kpRLVGACDNQtinASINIVFRSFTPTPgGFEFQPGKNYFLISTSDGtlegidrkkdglctakqMKIKFE 152 nematode
ADY46049      74 YDNCElr---neRLIGVCQNAeaqSSISIVFRDFSPLPgALEFKPGHSYYIITTSDGteagidkrsgglcvtrhMKMKFE 150 pig roundworm
XP_002435267  79 YDSCRitn-pmpRIIAVCDRPhqlMYFTITFRSFTPQPgGLEFRPGQDYYFISTSTGdvgglhrriggrcathnMKVIFK 157 black-legged tick
EFX72793      95 YDTCRitn-pnpRIIAVCDKPyklMYFTITFRSFTPQPgGLEFRPGQDYYFISTSSRddlhrrig--grcsshnMKVVFK 171 common water flea
NP_651927    280 YETCRitn-adpRVIAICDKPqklMFFTITFRPFTPQPgGLEFLPGNDYYFISTSSKddlyrrig--grcstnnMKVVFK 356 fruit fly
EKC32286      62 YSQCRldtpvrgTLVINCSEPnteQYFTILIRRFQSVPgMIDFPPGKYYFMTTSTGYleginnke-ngacrsnnMRLVMT 140 Pacific oyster
ELU12166      56 YDDCNlyspdtaIMIVNCSSPgkkKRFTILFEPFQSIPnVPEYHPGGRYYFISTSTGgregianphqgacvyknMKLTIQ 135 Capitella sp. I...
NP_510250     74 WSQCWlh---epVWLGVCATEnytTEVKLIFRQTNPIPdGMDFQVGKTYYIISTSTGdieginqavgglckyhhMKLAIS 150 nematode
XP_002645765  94 FDQCThnt-yytKLMGVCANEtetTAIKMIFQKYNPIPnGIDFQIGEIYYIVSTSSGhledisqptgglcwqenMKLAIR 172 Caenorhabditis ...
Feature 1          
1KGY_E       137 VG 138 house mouse
NP_501955    153 VG 154 nematode
ADY46049     151 VH 152 pig roundworm
XP_002435267 158 VC 159 black-legged tick
EFX72793     172 VC 173 common water flea
NP_651927    357 VC 358 fruit fly
EKC32286     141 VR 142 Pacific oyster
ELU12166     136 VC 137 Capitella sp. I Grassle & Grassle, 1976
NP_510250    151 VV 152 nematode
XP_002645765 173 IV 174 Caenorhabditis briggsae

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