Conserved Protein Domain Family
nuc_hydro_1

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cd02648: nuc_hydro_1 
NH_1: A subgroup of nucleoside hydrolases. This group contains fungal proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Statistics
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PSSM-Id: 239114
Aligned: 4 rows
Threshold Bit Score: 510.967
Created: 29-Apr-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active site
Feature 1:active site
Evidence:
  • Comment:DXDXXXDD motif is a hallmark of nucleoside hydrolase activity
  • Comment:Most nucleoside hydrolases possess either a tryptophan or a histidine at a position equivalent to PDB H241 in the base-aspecific nucleoside hydrolase of Crithidia fasciculate (2MAS_A). This histidine has been identified as the general acid in the catalysis. In the nucleoside hydrolase of the parasite Trypanosoma vivax (1HP0_A), as an alternative to general acid catalysis, the purine base of the substrate is bound between the aromatic side chains of W83 and W260, promoting the protonation of the purine base at N-7.
  • Comment:The majority of this group of nucleoside hydrolases possess a histidine, at a position equivalent to gi 49651202,loc297; the inosine-uridine-preferring nucleoside hydrolase of Crithidia fasciculata has a catalytic histidine (H241)at this position.
  • Comment:Active site predicted based on similar protein.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #   ##                         #                                        
CAG78139    2 PRSLIIDTDPGVDDALAISLALNSPe--cDLKLISLCFGNCDtNASLRNVEtLFSVFerervwreqqg-----lpakhhv 74  Yarrowia lipolytic...
EAK82481    9 PVPLIIDTDPGVDDVLAILLALASPde-vAVKAITLTFGNTTlDHAYANVLrLAAVLqrhladpatpdvvkqryrafsad 87  Ustilago maydis 521
EAL20538    2 PHKIILDTDPGVDDVLAILLALSSPe--vDLALISIVFGNTHaPVAHSNLLkIYHLLaqevaqtagaeg----rygrlkg 75  Cryptococcus neofo...
EAA50781    4 KHRIIIDTDPGVDDVLAILLALSASpedlEVAMISVTYGNVPlQGCLRNAVaLFHVLekerawrksvgk---etgfesls 80  Magnaporthe grisea...
Feature 1                                                                                     
CAG78139   75 nqkpIVAVGMDTALDgtrldATYFHGDDGLGNvhtkmpeftstd------------------kngpgytfsdkpSYQVIL 136 Yarrowia lipolytic...
EAK82481   88 aeplIVASGSTQPLEgkrftASYFHGRDGLSGvnwlpndpfpvpt-----------------eivaplaptdksAADVIL 150 Ustilago maydis 521
EAL20538   76 qvktVLAMGEDGPIGgekavAAYFHGPDGLSNisethphftppeiq--------------pgdmhahldtspkpSYEVIL 141 Cryptococcus neofo...
EAA50781   81 vfkpIVAIGAKHPLEeeelaADHFHGADGLHGvhdahpdltpaetwrtlfedapggapsdipsfstyftpsktlAHKEIL 160 Magnaporthe grisea...
Feature 1                    #                                  #     # #                     
CAG78139  137 DLLREEPdkSVTIAAIGPLMNIARAAQIDPDTFSRVkEIVHMGGALKVPGNVTPRAEFNCYSDPLAAAVVYsfsateqpc 216 Yarrowia lipolytic...
EAK82481  151 DTIRQHPphTVRIAALGPLTNLAAAFRKDPETFAKVgGISVMGGAFDVPGNTSPVAEFNWYADPYSVRVLIde-----ap 225 Ustilago maydis 521
EAL20538  142 DILRAEPddSVTIVALGPLTNIAHSLRADPETFTKVsRVVWMGGAIDHPGNTSPVAEFNCFADPYAASSVI--------- 212 Cryptococcus neofo...
EAA50781  161 RILKESPdqTVTILTIGPMTNLALAAAEDPETLLRArEVCVMGGAINVPGNITPVAEFNTFADAVATARVFalta-repa 239 Magnaporthe grisea...
Feature 1                                                                                     
CAG78139  217 VTLppr-------keFHVTlprpvpVTIFPLDITMEYnlyenq--fftavsDRAa--aGSPLTVwss----vwLQSTFDT 281 Yarrowia lipolytic...
EAK82481  226 RHAa----------lARRKl----pIQVLALDITCGHtvpysslvkatyetPRDtperASHLAR---------FIGTFLT 282 Ustilago maydis 521
EAL20538  213 SAAk----------eGKIE------LVMAPLDITTPHaipfsdl-ihpsvvPIPepstGAVRKApetptpleaFISAMLV 275 Cryptococcus neofo...
EAA50781  240 STMppctspslkpypEGLSrq--lkLSLFPLDITTDHllnkgf--fteriaPLVa--sGSPLARwle----hvLSRTFDK 309 Magnaporthe grisea...
Feature 1                                #                                                    
CAG78139  282 FRR-----------LNVDCSDvhinMHDPLATWYAIcgd-------ehgAWESHdq-dVRVETEGQWSRGVTIEDDRGrq 342 Yarrowia lipolytic...
EAK82481  283 HPRaftnnmvapeeFHPDRHDlf-eAHDPLAVAHAIfapmpatgsidgnGWKHTpr-rFQIETSGDLTRGFCVVDRRFtg 360 Ustilago maydis 521
EAL20538  276 RVRglq-----asfGLPDAME----MHDPVAVWYAIahagvprgagpveGWALQgr-eFTVERTGEYTRGMCVVDRRGtg 345 Cryptococcus neofo...
EAA50781  310 IDS-----------ILGDGSEpglsLHDPLTVWYMMtrd--------npAWKASagedIRVETAGQWTRGMHILDRRVrs 370 Magnaporthe grisea...
Feature 1                                                                      
CAG78139  343 ktdaeaedd------------------------gkwlgrggnhVKVVTKAPvev--gqLLVERIY 381 Yarrowia lipolytica CLIB99
EAK82481  361 kgssrktggnraedaerklhtiespdvpvhrkveevdesqvglVDEVTGTPgaewfskMFLERIG 425 Ustilago maydis 521
EAL20538  346 etgvdrskder-------------------ilsqglaqdtgntLPEKALKPr------MLPLVIT 385 Cryptococcus neoformans var. neof...
EAA50781  371 kpgvkqeagqaektevvdg---vqldevpgdtmgwlsrrrgnsVNRIVGSPgf----nIFAEYLM 428 Magnaporthe grisea 70-15

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