Conserved Protein Domain Family
R3H_jag

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cd02644: R3H_jag 
R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ. SpoIIIJ is necessary for the third stage of sporulation. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Statistics
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PSSM-Id: 100073
View PSSM: cd02644
Aligned: 112 rows
Threshold Bit Score: 69.8078
Threshold Setting Gi: 167957214
Created: 1-Feb-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RxxxH motif
Feature 1:RxxxH motif
Evidence:
  • Comment:The RxxxH motif gives R3H domain its name.
  • Citation:PMID 9787637

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                           #   #                            
YP_143708    118 RSRAEARIRRLAEEAALTVAMTgEPLHLPPmPPGERRIVHMLLKNHprVTTESQGeg-eeRHVVVYPR 184 Thermus thermophilus HB8
ZP_02250526   82 RERNEARLLEKARSLAERVQESgKPMKMPPlNAYHRRLVHNALQSMegIVTESEEgdsryKRITIRKG 149 Akkermansia muciniphila ATC...
ZP_01923029  133 ERSSAEQLEKQALDAAKEVKRWgEAVKLPEmNAHDRRIIHVTLQNDpdIVTESEGeg-afKKVVISLK 199 Victivallis vadensis ATCC B...
YP_001621397 138 HASRKRQLEIMATKTAKDVARSgIAVKLDPmNAFDRRIVHSKLTEWrdVETYSEGeg-eeRAIIIRPK 204 Acholeplasma laidlawii PG-8A
YP_001613157 121 RQRREDTLSSMARRLGKQAVEEgKIITFEPmNPQDRRVVHLALAKFpgVVTKSDGeg-eaRRVQIIPV 187 Sorangium cellulosum 'So ce...
ZP_02427296  132 KEDRYKKVASMAKRFGKQVLRTkAEIKLDPmPADERKVMHQELSRFehIKTESHGeg-knRHMVISYV 198 Clostridium ramosum DSM 1402
ZP_02077022  134 KEEKYQKVCSLARRVAKTVQRTkTDAVLDPmPADERKAVHNYLSTMkyVRTVSEGeg-nqRRLKICYA 200 Eubacterium dolichum DSM 3991
YP_001381667  96 YQEGDPALKAMAERLAATAMRTgKVLAVAPiSARERRQIHLALVNHegVTTHSEGeg-ifRQLLVVPA 162 Anaeromyxobacter sp. Fw109-5
ZP_01811161   86 KQQRADRLTRQAEDWIKKVRATgETYSLPPmNAADRRVVHHVVGEYgdLTTRSVGeg-kdRHVIIEKV 152 candidate division TM7 geno...
ZP_02520100   86 KKQRADKISRKAEGWIEKVRSSkRPYRAHL-NASDRHTVHQLAADYddIVTHSEGeg--hDRVLIISL 150 candidate division TM7 sing...

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