1DJ0


Conserved Protein Domain Family
PseudoU_synth_EcTruA

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cd02570: PseudoU_synth_EcTruA 
Click on image for an interactive view with Cn3D
Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA.
This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.
Statistics
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PSSM-Id: 211337
Aligned: 140 rows
Threshold Bit Score: 217.726
Created: 3-Mar-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimerizationactive site
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:dimerization interface 3.5A [polypeptide binding site]
Evidence:
  • Comment:Escherichia coli TruA is a homodimer.
  • Structure:1DJ0_A, Escherichia coli TruA: interface with 1DJ0_B, defined using 3.5A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #                                                                          # 
1DJ0_A      8 LGIEYDGSKYYGWQRQNEv--rSVQEKLEKALSQVAn-EPITVFCAGRTDAGVHGTGQVVHFETtalrk-daawTLGVNA 83  Escherichia coli
Q8R601     10 IEFRYDGSSYYGFQRQPNk--iTVQGEIEKVLRIVTk-EEINLISAGRTDRGVHANHQVSNFYTssnip-iekyKYLLTR 85  Fusobacterium nucl...
Q9PPV4      5 ISLRYDGSLFYGWARQPQk--rTVQGDLEEIFKSIFkiNNIRIIGSGRTDKGVHAYEQTFSVKHsal----kydSHIIYQ 78  Ureaplasma parvum
O66953      6 LRLAFVGTNFYGWQVQPNl--rTVQGEIQKALSQILc-EDVKVTGCCRTDSGVHALDYIANFKTqkdfp-eeklLKALNG 81  Aquifex aeolicus
Q6F1W2      6 ITLEYDGSDFHGWIEQPKt--sTIQGELNKAINRVTknAVFKTIGASKTDTGVHAIDQKVLLDLgfnpk-ldlfKKAINK 82  Mesoplasma florum
Q7NAQ9     26 INISYHGTKFHGYAVQNDy--eTVQSKLQDALAWIYe-SKIYVNASGRTDKGVHAINQYISFYIddris-leklREILNR 101 Mycoplasma gallise...
Q50291      6 AIVAYNGAPFRGWAKQPGy--hTVQGQIEQNLALIYq-TPINIYGSGRTDKGVHAINQTFHVDLpdklp-lkqlIAKLNQ 81  Mycoplasma pneumoniae
Q8CXQ1      5 LKISYDGSFFRGYAKQKDenliTVQSELEKYLSLFFn-TKISTFGSGRTDKYVHAIDQTVSFKCdsd-----ydPKSIQN 78  Mycoplasma penetrans
Q6MSQ4      7 LSLCYDGSNYHGWINQTNa--iSIQTTLNKAIKKVIktGQFKTIGASKTDTNVHALDQKVLLIIyftpi-lekfIKAINK 83  Mycoplasma mycoide...
P60353      6 LSIEYDGYDYSGWVKQKNa--rTIQGELEKAFFGICh-QKIWTLGASKTDAGVHACDQKVLVKLtfqprhlaffIKTVSQ 82  Spiroplasma kunkelii
Feature 1      ###    #####                                                                   
1DJ0_A     84 NLPG----DIAVRWVKTVPDDFHARFSAtaRRYRYIIYnhrlrPAVLSKGVTHFye-pLDAERMHRAAQCLLGENDFTSF 158 Escherichia coli
Q8R601     86 ALPN----DIDILSVEEVDENFNARHNAkmREYIYIISwe--kNPFEARYCKFVke-kIVAEKLEKIFSDFIGVHDFKNF 158 Fusobacterium nucl...
Q9PPV4     79 ALCSrtssDIQILEVQKVDDSFHAQYNAtsKTYQYVINdy-efDLFRNNYELFVnq-kINDQKILEALELFVGEHDFKSF 156 Ureaplasma parvum
O66953     82 ILPK----DVGVYAVKKVSEEFNARYSVkgKVYLYKIWnsevrNPFLYPFSWQVkr-eINTEVLRNILKKFEGTHDFRAL 156 Aquifex aeolicus
Q6F1W2     83 ALPE----TIKVRSIEEVKQDFNIRDVLy-KEYSYTINdk-eyNILSNRFELNWdfeeIDIDKLQNIFNLFIGEHEFKLF 156 Mesoplasma florum
Q7NAQ9    102 YGQN----KWYIKWIKEVDRNFHARFSAkaKTYLYLIDyc-anNPLFYDHAWIVnf-qLDFNLIEKAIPILEGTHNFWSF 175 Mycoplasma gallise...
Q50291     82 LNYP----DIFVKALVPVAPRFHARFAVktKVYEYLINtr-afNPAQYHTVWQYnh-pLDLAQLEADTTLFLGRKDFWSF 155 Mycoplasma pneumoniae
Q8CXQ1     79 FLNSkl-tNIYVNSIEKVPNSFHARFSIksKTYMYVINtg-efDVFKQRYEYQYnk-sIDIKKCEDIINLFIGTKDFLSF 155 Mycoplasma penetrans
Q6MSQ4     84 ALPS----DIKILDAKFVDPNFNIREVEy-KIYHYYINdh-qfDIFTNRYEYFWkhqkIDIIKLQEIFNLFIGEHEFKLF 157 Mycoplasma mycoide...
P60353     83 TLPP----NINIKGYQFVAENFSVRTVKv-KEYVYTINdq-eyDLFNHRYELKVna-pLNVKKLHQISQIFVGTHDFAYF 155 Spiroplasma kunkelii
Feature 1                                                                                     
1DJ0_A    159 RAVqcq-----srtPWRNVMHINVTRhg-pyVVVDIKANAFVHHMVRNIVGSLMEVGA-HNQPESWIAELLAAKDRtla- 230 Escherichia coli
Q8R601    159 RLSdcv-----skvTVREIYQIEVKYfgenkIKIYIKGSAFLKSQVRIMVGTALEIYY-GRLLENHIRLMLNDFTKeyk- 231 Fusobacterium nucl...
Q9PPV4    157 STSel-------tmTIRRINWVKIKRdt--hLIIYINANGFLKNMVRMIVASCLDYAF-NKISLAKIHELLIYPKKgas- 225 Ureaplasma parvum
O66953    157 TKLeee------rnTVINLEEVSLNVey-plIEIRLKASHFLRYMVRRIVGTAVKISL-GLYSEEVLEELLQGKGNsp-- 226 Aquifex aeolicus
Q6F1W2    157 SGLnhkeldsnkitTIREIESIDVKRal-dkVVITFKAKGFIRYQIRMIVQSALNCYLnKKISADEIKEKLQGKGNkp-- 233 Mesoplasma florum
Q7NAQ9    176 STAdk-------dkGLRTIHKIDLKQed-nkVYIYITGDGFLRSMVRMIVGALYNIGI-KKYDLNHLKWLLDNPKKgra- 245 Mycoplasma gallise...
Q50291    156 STAsq-------kdTQRTISKIIVQQdhtgtVKLTFFGNGFLRNQIRMMVASLVALNN-RTLMRETVQQLFDQPQKggc- 226 Mycoplasma pneumoniae
Q8CXQ1    156 STSkl-------enTTRTIRWIRIIKkn-kkIYIFINGEGFLRNMVRMIVGIILTYCE-NKITYQEVLDLFKNPKKgsa- 225 Mycoplasma penetrans
Q6MSQ4    158 SGLkenew--nqyqTKRTIDDIKVLRin-nkVVIQFKASGFIRYQIRIIIANCLNAYLnHKISTTKLVEMLQGIGKkt-- 232 Mycoplasma mycoide...
P60353    156 AGVkpte----diaTVHTINKIWVKRnkakkIEIHFRGKIFIRYQIRMLTQNILACYA-GKVSLTELQAQLNCPPKgttt 230 Spiroplasma kunkelii
Feature 1                     
1DJ0_A    231 aaTAKAEGLYLVAVDY 246 Escherichia coli
Q8R601    232 knLVEAEGLYLNKIEY 247 Fusobacterium nucleatum subsp. nucleatum
Q9PPV4    226 ikLAPACGLYLYKVYY 241 Ureaplasma parvum
O66953    227 -yTAPPQGLHLEKVLL 241 Aquifex aeolicus
Q6F1W2    234 pfNAPAKGLKLNKIVF 249 Mesoplasma florum
Q7NAQ9    246 itKAPASGLYLYEVYY 261 Mycoplasma gallisepticum
Q50291    227 kvKAPACGLYLKTVLY 242 Mycoplasma pneumoniae
Q8CXQ1    226 viKVPGCGLYLYRTIY 241 Mycoplasma penetrans
Q6MSQ4    233 pfIIDAKGLVLQKIQF 248 Mycoplasma mycoides subsp. mycoides SC
P60353    231 kyCAKPYGLCLKKIKY 246 Spiroplasma kunkelii

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