Conserved Protein Domain Family
PseudoU_synth_TruC

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cd02563: PseudoU_synth_TruC 
tRNA pseudouridine isomerase C
Pseudouridine synthases catalyze the isomerization of specific uridines in an tRNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. TruC makes psi65 in tRNAs. This psi residue is not universally conserved.
Statistics
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PSSM-Id: 211333
Aligned: 12 rows
Threshold Bit Score: 346.245
Created: 8-Mar-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
probable active
Feature 1:probable active site [active site]
Evidence:
  • Comment:D of active site is key conserved residue

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                           ####                        
Q46918        2 LEILYQDEwLVAVNKPSGWLVHRSwldr---dekvVVMQTVRDQIGQhVFTAHRLDRPTSGVLLMGLsSEAGRLLAQQFE 78  Shigella flexneri
ZP_00348800   5 LPILYRDEhVVVIDKPSGLLVHRSeidr---hetrFAIQILRDQIGQrVWPAHRLDRGTSGVLLFGLnPAMASQLGKQFE 81  Dechloromonas ar...
ZP_00648626   2 LEILYQDEhLVAINKPSGLLVHRSpidr---heteFAIQTLRNQLGRfVYPIHRLDKPTSGVLLFALdKESAKIMGEKFM 78  Thiomicrospira d...
AAQ60018      2 LQILYRDDlLIAIHKPSNLLVHRTeldr---hetrFAIQMLRDQIGRrVYPVHRLDKGTSGALLFALdKDAGRELSLQFE 78  Chromobacterium ...
ZP_00637551  45 IDILFEDEhLVAIHKPAGLLVHRSylar---rerfFAMQMTRDLVGChVFPVHRLDRPTSGVLLFAKsSEVARALCEQFA 121 Shewanella frigi...
NP_954201     1 MEILFRDQyLVAVHKPAGLLVHRSpidr---hetrFALQEVRDLLGRrVYPVHRLDKPTSGVLVFALdPATARSLGDAFA 77  Geobacter sulfur...
NP_968282     7 LKIIYQDEnFFAIDKPSGFFVHPPelspypvpkerICLWHLRKMFRKdVFPVHRLDAPTSGIVLFAMsRQDARELNFLFA 86  Bdellovibrio bac...
NP_968406    51 VELLYKDEyFIAVNKPSGFHVHPHenvqhrvsrdkICLYHARRMMKQhVYPVHRLDAGTSGVLLFALsSESASKLCRLFT 130 Bdellovibrio bac...
YP_155238     4 LEVVYLDEhLAVINKPSGLLVHRSrias---gareFAMQMLRNQLGChVYPVHRLDRPTSGLLIFGLnSDVARTLTEQLT 80  Idiomarina loihi...
EAO11066     15 IEIIYEDEfLVAINKEAGLLVHRSwldk---getrFAMQLTRDAVGChVFPVHRLDKPTSGVLLFAKsSAVARSLTEAFT 91  Psychrobacter cr...
ZP_00472782   5 LPVLYQDErMVAVQKPSGMLVHRSpiar---darvFALQTLRNQLGRhVYPVHRLDRPTSGLLLFALdPEMAQALGEEFT 81  Chromohalobacter...
AAZ25176     21 LDILYQDEyMVAVDKPAGLFVHRSymdk---deiyFALQLVRDQVGQyVYPVHRLDRPTSGVLLFALtKDVATKLSEAFA 97  Colwellia psychr...
Feature 1                                                                                       
Q46918       79 Qh---------------------------------------------qIQKRYHAIVRGwlme-eavlDYPLVEELDKia 112 Shigella flexneri
ZP_00348800  82 Qg---------------------------------------------tVEKAYWAVVRGyppa-sgsiDHPLTRQRDPye 115 Dechloromonas ar...
ZP_00648626  79 Ah---------------------------------------------eAKKSYIAVVRGytlq-sgeiDYALSIKFDKia 112 Thiomicrospira d...
AAQ60018     79 Rq---------------------------------------------qVYKRYLAVVRGhpdd-aghiDHPLSRRPDDle 112 Chromobacterium ...
ZP_00637551 122 Dh---------------------------------------------sIKKHYLAIVRGnmhe-sgtlDYALKQEFDDlg 155 Shewanella frigi...
NP_954201    78 Gg---------------------------------------------rVNKTYLAVTRGivpp-egiiDHSLSEEPDRld 111 Geobacter sulfur...
NP_968282    87 Er---------------------------------------------rMHKTYHAVVRGfvp---asgSIDLPLEVDEgq 118 Bdellovibrio bac...
NP_968406   131 Er---------------------------------------------aTHKTYQAVVRGfvk---eegEVQLPLELDStg 162 Bdellovibrio bac...
YP_155238    81 Ar---------------------------------------------eVSKTYHAVVRGyvpe-ngtiDYALKEELDKla 114 Idiomarina loihi...
EAO11066     92 Eh---------------------------------------------kVTKQYLAVVRGymse-qgtvDYALSFQPDAia 125 Psychrobacter cr...
ZP_00472782  82 Ah---------------------------------------------rVHKRYLAVVRGvgpe-qdllDYGLREEDGSrp 115 Chromohalobacter...
AAZ25176     98 NkssqaefksdtelegkvhdktqtgqqgqqsmteglttdknidgsdlaMVKTYYALARGhlavpvdliDHPLKEKLDKlg 177 Colwellia psychr...
Feature 1                                                            #                          
Q46918      113 dkfa-redkgPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGA 191 Shigella flexneri
ZP_00348800 116 fkge-qcsteAQPALTHFRKLAEIELPVEVDRYPSSRYALLELEPITGRRHQIRRHLKHLAHPIIGDATYGKGRHNRYFA 194 Dechloromonas ar...
ZP_00648626 113 dkds-ssdkePQEALTHYKRLATVELDFEVGKYDKTRYSLVKLNPLTGRKHQLRRHMKHISHHILGDTKYGRGEHNKLIR 191 Thiomicrospira d...
AAQ60018    113 wige-kvetaPQPAVTDYRTLARVELPIMVERYPTSRYSLLELEPQTGRKHQLRRHLKHIAHPIIGDSTHGKGRHNRMFA 191 Chromobacterium ...
ZP_00637551 156 dkhv-dqnkaAQDAVTDYQPLLNTEIPFSSGRYPTSRYGLVKLSPHTGRKHQLRRHMAHLRHPIVGDTTHGDGKQNKFFR 234 Shewanella frigi...
NP_954201   112 gak--sspaaPQPAVTVFRRLAEAELPVVTGRYASSRYSLAELTPHTGRRHQLRRHMKHIFHPIIGDTTYGEGRHNRFFR 189 Geobacter sulfur...
NP_968282   119 --------siVEAQTVFRSLAQVELPYAVGKKYPTSRYSLVQAHPVTGRWHQIRRHFDRIAHPLLGDIEHGDSHHNRFFR 190 Bdellovibrio bac...
NP_968406   163 --------dlVDAHTSFKRLATVEFPVAVGKKFPTARYSWVEVTPHTGRYHQIRRHFNRISHPLLGDAVHGDSHHNRFFR 234 Bdellovibrio bac...
YP_155238   115 dkdadpdkdkQPAVTHYQCLKQIELPYKVSKKHDTTRYSLVQMQPETGRKHQLRRHMAHIRHPIVGDTNHGDGRHNNFFR 194 Idiomarina loihi...
EAO11066    126 dkfanldkpaQEAVTHWQSLAQIELPFAVSKKHDTSRYSLMRLTPETGRKHQLRRHMRHLFHHIVGDTSHGDGRHNRFFR 205 Psychrobacter cr...
ZP_00472782 116 ka-----empELEAWTAVRRLDSVELPVRIDRYPQVRYSLMEARPWTGRRHQIRRHLARRGYPIIGDAKHGKGAHNRFFR 190 Chromohalobacter...
AAZ25176    178 dknv-srdkpAQSAQSYYQVKQQASLPIKVGKFDSVRYSLIEVRPITGRRHQIRRHLAHLRHPILGDINYGDNKQNPFFI 256 Colwellia psychr...
Feature 1                                        
Q46918      192 EhFGLQRLMLHASQLSLTHPfTGEPLTIHAGLD 224 Shigella flexneri
ZP_00348800 195 EqLGCHRLLLACIRLSFNHPvTGLRLDIKTPVS 227 Dechloromonas aromatica RCB
ZP_00648626 192 QeFGCHRMLLHAIALEISHPyTKELLYIKAPLD 224 Thiomicrospira denitrificans ATCC 33889
AAQ60018    192 DqLGCRRMLLACVEMRLTHPiTGQPLLLNCPLE 224 Chromobacterium violaceum ATCC 12472
ZP_00637551 235 EhFTINRLWLIAKSLQFVHPvTQQSMHIETELE 267 Shewanella frigidimarina NCIMB 400
NP_954201   190 EeFGCGRLLLHAAELSLPHPaSGETLTIAAPPD 222 Geobacter sulfurreducens PCA
NP_968282   191 DtLNIKGLCLKATKIEMESPwNGQRVVIEAPAC 223 Bdellovibrio bacteriovorus HD100
NP_968406   235 NhLEIEGLCLKALRLEFTHPwSGEKVSIEAPPC 267 Bdellovibrio bacteriovorus HD100
YP_155238   195 EhFNCHRLLLAATGLSFKHPvSGESINLEIPLP 227 Idiomarina loihiensis L2TR
EAO11066    206 TqYGCARMLLHAQTLALSHPvTGEPLLLKAGLD 238 Psychrobacter cryohalolentis K5
ZP_00472782 191 ErLDSPRLLLAAVGMTVWHPeQARTLQLDAPLA 223 Chromohalobacter salexigens DSM 3043
AAZ25176    257 EhFGFKRLMLIAKSLEFNHPiNNDRIKISAPFD 289 Colwellia psychrerythraea 34H

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