Conserved Protein Domain Family
Peptidase_C39_likeD

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cd02421: Peptidase_C39_likeD 
A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this sub-family.
Statistics
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PSSM-Id: 239102
Aligned: 22 rows
Threshold Bit Score: 127.744
Created: 24-Mar-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_887735    19 HASHEDPLLDCLVELTRIHGVPata---------qaLSSGLPLVEHRLTPALLPRAAARAQMSARTVKRTLdeISPELLP 89  Bordetella bronc...
YP_207123     6 AFNMKDSLLHSLCYVSRYYGQInsp---------eaLINGLPLQDGKLTPFLFSRAAERAGLVAKENQGELlsIPQLILP 76  Vibrio fischeri ...
ZP_00262783   3 DDPLLDGLLALCMLHQKPASAAm-------------LTTGLPLPKQRLSVELLPRAAARAGLQGRVLQRKLeeIPAIAMP 69  Pseudomonas fluo...
NP_772108    21 RLESDDPLASSLIFLASYHGRAvsr---------eaLLGGLPILDGRLSVPLYDRAAQRAGLQTEAVKRDIadIPALVLP 91  Bradyrhizobium j...
CAD90951     16 ELAKNDSLLACLVLLTRYYQNPfsp---------psLIARLPLVNSKLSVDMFSRAAARASLDSEVKTLKLeqITDSDIP 86  Legionella pneum...
YP_051357    34 RSRHDDPLLDSLLILCTLQGKSvsr---------ttLTAGLPLANQRLSVKLLPRAAARAGLQGRVLKRSLnkISEMSLP 104 Erwinia carotovo...
NP_719843    18 QRVIVDPLLDCLVLLTEHFGNPcss---------dsLAAGLPLSGAVLTPDLLPQAASRAGLAAKLSRKGLneISPILLP 88  Shewanella oneid...
ZP_00263400  14 RLSFDDPLLDGLLILCKLHGATvsr---------asLSAGLPLDKQRLSLDLLPRAAARAGLQARLLRRELkdISPLNLP 84  Pseudomonas fluo...
YP_064249     3 DKLRSDPLLLCLVTLTKIDKKPasaealieglpfdpNDEKKRLFSIKSSNSNFSRAAGRAGFSSTLQQRPLssIPAVVLP 82  Desulfotalea psy...
AAO08379      5 VEERQDHWLTAILWACQHFGIRcha---------lkVVNGLPLENGQLSEALFQRAAEQAQLEVGLTSLSL--LEQATFP 73  Vibrio vulnificu...
NP_887735    90 AILlLRGERACLLLGTAp--gGKYLISHPe-lGASAVEMDADLLQEDYTGLACFVRP 143 Bordetella bronchiseptica RB50
YP_207123    77 VVLlLKGGESCVLIGFDae-rKEAEIITLs-sDMLPISISVEDLEAQYIGRYILLKK 131 Vibrio fischeri ES114
ZP_00262783  70 ALLlLKDGRSAVLLGWQg--eNEARVLLSe-sDGGESLVSRELLADDYTGKVFFAQP 123 Pseudomonas fluorescens PfO-1
NP_772108    92 AVLiMKNGTTLILLGFDksgsSVKVLNPSl-kAGIPELHAIQTISAGYTGYAFFVRA 147 Bradyrhizobium japonicum USDA 110
CAD90951     87 VVLiKKNGEAVLLILEDd---GKRAILDP---KQPDSRIDLNQIADELSGEVIFVEQ 137 Legionella pneumophila
YP_051357   105 AMLlLREGRAAILLGWNp--dGSARLMPSe-tEGGEISVEHNTLQQNYLGLVMFAQP 158 Erwinia carotovora subsp. atroseptica S...
NP_719843    89 CILlLKDKKACILREFDle-sDRAVIQLPe--TGGEEILTIESLETLYVGYLFLVKQ 142 Shewanella oneidensis MR-1
ZP_00263400  85 VLLlLGNGRTAVLRRFAe---DGKALILPseaDGGEQWVSREELTEHYSGQALFARP 138 Pseudomonas fluorescens PfO-1
YP_064249    83 VILlLKNDAACVLTKILpe-qGKAVIIIPs-iDDEPMEISMEKLEEDYLGYVFFLKR 137 Desulfotalea psychrophila LSv54
AAO08379     74 CLAvEKQGSPLLILGREg---EHYRCLSPh-qANSDVTLSLDELKTQVKEGIWQLST 126 Vibrio vulnificus CMCP6
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