1WIN,2ZUO,2RPB


Conserved Protein Domain Family
SPFH_like

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cd02106: SPFH_like 
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core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
This model summarizes proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons, and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease, and in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.
Statistics
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PSSM-Id: 259797
Aligned: 15 rows
Threshold Bit Score: 60.8405
Created: 13-Dec-2003
Updated: 5-Apr-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1WIN_A     13 EIMTLQPRc-eDVETAe-GVALTVTGVAQVKIMtek----ellAVACEQflgk-nvqdIKNVVLQTLEGHLRSILGTLTv 85  house mouse
CAB12440  105 TKQAINIP---AAGMPg-GMPIRANGTFNFKVQdyi-----slIDKIAGvkdqyfvedIKTRIISILDQLLMKWITREGk 175 Bacillus subtilis ...
2ZUO_B    519 GPDFFTDVi--TIETAd-HARLQLQLAYNWHFElknrndpaeaAKLFSVp-------dFVGDACKAIASRVRGAVASVTf 588 Norway rat
2RPB_A      8 REHVIDVPp-qEVICKd-NVVVTVDAVVYYQVId--------pVKAVYNvs------dFLMAIVKLAQTNLRAIIGEMEl 71  Pyrococcus horikoshii
AAN17454   52 RVQSLDVRv--ETKTKd-NVFVQLICTIQYRVVke------naDDAFYElq------nPQQQIQSYVFDVVRAIVPRMEl 116 barley
AAT77024   72 DVRARPNLvesTSGSRd-LQMVRIGLRVLTRPLpe-------kLPTIYRslg---enfNERVLPSIIHETLKAVVAQYNa 140 Japanese rice
NP_716238 111 VQSVRSVPssgSMLTSd-ENVVKVELDVQYRISda-------yAYLFSAv-------dANASLREATDSALRYVIGHNKm 175 Shewanella oneiden...
P40606     68 RIQTMDGRa-dRFVTSe-KKDVIIDSYVKWRIEdfg-----ryYLATGGgns----ltAEALLERKVTDVLRSEIGAREi 136 Vibrio parahaemoly...
O94905     65 TLQTDEVKn-vPCGTSg-GVMIYFDRIEVVNFLvp------naVYDIVKnyt---adyDKALIFNKIHHELNQFCSVHTl 133 human
NP_857682  72 DEPFTFQM---SDGTAigHKIGVAYLVNRNKVTt---------VFQTYRkgv---ddiTDTDLRQKIADSLNRLASRMTt 136 Yersinia pestis KIM
1WIN_A     86 --EQIYQd------------------------------RDQFAKLVREVa-aPDVGR-----------------MGIEIL 115 house mouse
CAB12440  176 dmFNLQAn------------------------------AFDIAKGIQEDl-dMQLIS-----------------DGMTVT 207 Bacillus subtilis ...
2ZUO_B    589 --DDFHKn-----------------------------sARIIRMAVFGFe-mSEDTGpdgtllpkardqavfpqNGLVVS 636 Norway rat
2RPB_A     72 --DETLSg------------------------------RDIINARLREEl-dKITDR-----------------WGVKIT 101 Pyrococcus horikoshii
AAN17454  117 --DSLFEq------------------------------KNEVAKAVLEEl-eKVMSD-----------------YGYSIE 146 barley
AAT77024  141 --SQLITq------------------------------REAVSREIRKIl-tERASN-----------------FNIALD 170 Japanese rice
NP_716238 176 --DDILTt-----------------------------gRDAIRRDTWKEl-eRILEPy---------------kLGLAIV 208 Shewanella oneiden...
P40606    137 --KQIVSgprnddvlpedassdevnteaarealeidgeRDLIMSDVLRDtreSAMKD-----------------LGVRVV 197 Vibrio parahaemoly...
O94905    134 qeVYIEL-------------------------------FDQIDENLKLAl-qQDLTSm---------------aPGLVIQ 166 human
NP_857682 137 --DTFIDgg----------------------------kASLLDNALKDIq-aEMSPV-----------------GIEVIS 168 Yersinia pestis KIM
1WIN_A    116 SFTIKDVYDKV 126 house mouse
CAB12440  208 GFQIMSFNYPQ 218 Bacillus subtilis subsp. subtilis str. 168
2ZUO_B    637 SVDVQSVEPVD 647 Norway rat
2RPB_A    102 RVEIQRIDPPK 112 Pyrococcus horikoshii
AAN17454  147 HILMVDIIPDA 157 barley
AAT77024  171 DVSITSLSFGK 181 Japanese rice
NP_716238 209 DVNFLPARPPE 219 Shewanella oneidensis MR-1
P40606    198 DFRMKKINLPD 208 Vibrio parahaemolyticus
O94905    167 AVRVTKPNIPE 177 human
NP_857682 169 LSWVGKPDYPD 179 Yersinia pestis KIM
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