Conserved Protein Domain Family
corrinoid_protein_B12-BD

?
cd02070: corrinoid_protein_B12-BD 
B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Statistics
?
PSSM-Id: 239021
Aligned: 22 rows
Threshold Bit Score: 212.097
Created: 12-Jan-2005
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
B12 bindingcobalt ligand
Feature 1:B12 binding site [chemical binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
4980766     570 LVEIILSgnrseleKLVEDFLKek-dPLSVIEEHLRPAMERIGELYDkgkifLPQLILAAQTVKPVFDKLTSMLPSDsq- 647 Thermotoga maritima
ZP_00312090 599 VYDAVVKgdrenirKYIDDALKdgtePSIIVDKYLIPAITHVGDLYDrkeyfLPQLIQSAETMKEAFGILEPLLKKEpvd 678 Clostridium ther...
NP_615887    13 LSDAIVSckkdrviAAVEKAKEvm-ePAEIIEKGLAAGMNQVGTLFErgklfLPHVMMAADSMTAGVNILEAEMPAGtet 91  Methanosarcina a...
CAE48302     53 VALAVLYgdkdecdAQVAKALDageePIDLINNALMKGMDGVSASYTkgeffLPDLMLAGDAMMSGVALCEAKLGHKads 132 Methanosphaera s...
22001820     11 AKEAITDfddelaeEVANEALAagidPVELIEKGFTAGMEEVGEKFGqgelfLPHVLAAAEAMNSGIKVITPEMEKRksq 90  Methanosarcina b...
12751299     45 VAKAIFEgeeddvvEGLQKAIDsgkdPIALINDSLMVGMGVVSKLYDdgvifLPNVMMSADAMLEGIDFLKQKAGKApev 124 Methanosarcina a...
1019941      66 VAEAVIEgnnaetvKLISALLEkgkdPTDLVLNALMPGIQTVCELYDigesyVPEILLANEALMKGVELCQKKKGEVps- 144 Methanosarcina b...
21542140     10 LRDAIVNqdvagtpELCKEALAlgipALDIITKGLSVGMKIVGDKFEaaeifLPQIMMSGKAMSNAMEVLTPELEKNkke 89  Methanosarcina b...
ZP_00301529 602 LKRAVITgdrenivALVEEALGqglePLQVSNEGLLPGLEEVGRRFEknlvfLPQVMQSADTMQAAFGRLREVMKGSpaa 681 Geobacter metall...
NP_619032    49 LALLVMDgeeemtqGWTQVAIQigtdPFKTLIEGLAAGMSLIGKKYEegeafVPQLLIASAAMYGGMDLLAPYMKQDens 128 Methanosarcina a...
Feature 1                     #######  #                                      ### ###           
4980766     648 ----geTFVIATVKGDVHDIGKNIVASVIRSSGYRVVDLGKDVDTSEIVEAVEKE--RPVALGLSAMMTTTVGRIKEVVE 721 Thermotoga maritima
ZP_00312090 679 ekgnkvKVILATVKGDIHDIGKNIVGLMLRNYGFEVYDLGKDVSAEEIVKKAKET--NAPIIGLSALMTTTMLEMREVVS 756 Clostridium ther...
NP_615887    92 k--klgVIVNGTVEGDVHDIGKSIVSTMLQSAGFEVHDIGRDVPIKNFVEKAKEV--NADMIGLSALMTTTMQGQRDVIE 167 Methanosarcina a...
CAE48302    133 ----kaTVCCCAVEGDPHDIGKNLIVMFLNANGYEAVDLGRDVPNTKVVEAVKEN--KPVLVTATALMTTTMTAFGKIIA 206 Methanosphaera s...
22001820     91 t-kslgTVAIGTIEGDIHSIGKDIVASMLNIAGFKVVDLGRDVPINTFVEKVKEL--KPQVVASSALMTTTMVNQIQIEE 167 Methanosarcina b...
12751299    125 ----kgKVVCHVAEGDVHDIGKNIVVALLRANGYDVIDLGRDVPVDEVIETVEKE--SPLMLTGTALMTTTMYAFKEIND 198 Methanosarcina a...
1019941     145 ----qgKVVSLVIVGDLHDIGKNIVAAILRANGFEVIDLGRDVTVEAAVEAVKST--KANLVTGTTLMSTTKGGLKALAN 218 Methanosarcina b...
21542140     90 g-deagLAITFVAEGDIHDIGHRLVTTMLGANGFQIFDLGVDVLNETVVEEAAKHkgEKVLLVGSALMTTSMLGQKDLMD 168 Methanosarcina b...
ZP_00301529 682 ---srgKILMATVEGDIHDIGKNIVCTLLENHGFEVIDLGKNVPADRIVGKAREL--GVDAVGLSALMTTTMTEMENVIA 756 Geobacter metall...
NP_619032   129 g-skaaTVVIGTVEGDVHDIGKSLVKTLLSANGFNCVDLGNDVPASRFIEAAREN--KATAVSMSTLMTTTMAEMPKVVK 205 Methanosarcina a...
Feature 1                        #                    #  #   #      
4980766     722 KLKEKNl--kIPVIVGGAslnek-----lakeLGADYYAKNAs-eAVKILKS 765 Thermotoga maritima
ZP_00312090 757 LVRQEGl--nAKIMIGGAvvnad-----yakeIGADGYSEDAy-gAVKLASK 800 Clostridium thermocellum ATCC 27405
NP_615887   168 LLKEEGmrerVKVMVGGApatqa-----wadkIGADCYAENAs-eAVAKAKE 213 Methanosarcina acetivorans C2A
CAE48302    207 LMQEAGl--dTPFGCGGGavrrdfveetpqtfYGVEAYHVPKl--ADAIVDD 254 Methanosphaera stadtmanae
22001820    168 QLKEAGvrdqVKTMVGGApvtqd-----wadkIGADIYGESAn-dAVAKVKA 213 Methanosarcina barkeri
12751299    199 KLMEKGy--rIPFACGGGavnqdf---vsqyeLGVYGEEASDapkMADFIKA 245 Methanosarcina acetivorans
1019941     219 ALEPEG----VPLACGGAavdrr-----fvdtFGNSVYGRTPl-dAVKIAKE 260 Methanosarcina barkeri
21542140    169 RLKEQKlrdsVKCMFGGApvsdk-----wieeIGADATAENAa-eAAKVALE 214 Methanosarcina barkeri
ZP_00301529 757 RLKEAGi--rTFTMVGGAvvtqe-----yadeIGADLYARDAm-eAVARIKA 800 Geobacter metallireducens GS-15
NP_619032   206 MLENEGirdkLLVMVGGApitae-----yasqIGADVSPHDAa-sAASWLKG 251 Methanosarcina acetivorans C2A

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap