Conserved Protein Domain Family
PRK_like

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cd02029: PRK_like 
Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Statistics
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PSSM-Id: 238987
Aligned: 7 rows
Threshold Bit Score: 543.237
Created: 22-Nov-2004
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Active site
Feature 1:Active site [active site]
Evidence:
  • Comment:GxxxxGK[S/T], signature p-loop motif, also known as Walker A motif, present in various triphosphate nucleotide binding proteins. The Lys residue within the motif plays a major role in the phosphoryl transfer.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #    ####                                                                  
NP_896878     7 VVAVTGSSGAGTSTVKRAFEhIFAREGITPAVVEGDSYHRyERMPMkqamaDALARG-ENFSHFGpEANLFDKLEElfRS 85  Synechococcus sp...
NP_892903     7 VVAVTGSSGAGTSTVKRAFEhIFAREDIVPAVVEGDSYHRfERMPMkkamaEALSKG-ENFSHFGpEANLFDKLEElfKI 85  Prochlorococcus ...
ZP_00270018   7 IIAITGSSGAGTTSVTRTFEqIFRREGVNAAVVEGDSFHRnDRKAMkiamaEAQKAGnANFSHFGpEANLFEELETlfRT 86  Rhodospirillum r...
NP_312233     7 VIAVTGSSGAGTTTTSLAFRkIFAQLNLHAAEVEGDSFHRyTRPEMdmairKARDAG-RHISYFGpEANDFGLLEQtfIE 85  Escherichia coli
ZP_00243779   7 VIAVTGSSGAGTTTVKRVFEnIFRREGIRPAVIEGDAFHRfSRQEMkeriaQGDLEG-RAVSHFGpDTNEWALLEQqfRA 85  Rubrivivax gelat...
P37307        7 VIAVTGSSGAGTTTTSLAFRkIFAQLNLHAAEVEGDSFHRyTRPEMdmairKARDAG-RHISYFGpEANDFGLLEQtfIE 85  Shigella flexneri
ZP_00208632   7 VIAVTGSSGAGTSTVKESFEhMFRREGIKPAVIEGDSFHRyNRADMk---kCMKDVG-GTFSHFGpEANLFPQLEElfST 82  Magnetospirillum...
Feature 1                                                                                       
NP_896878    86 YGETGAGqkRYYLHSAEEAaehnarlgvdlgPGQFTPWedipaGTDLLFYEGLHGGvkgdgyDVASLADLlvgvvpitnl 165 Synechococcus sp...
NP_892903    86 YGESGGGkkRYYLHSTEEAqehnarlgtslePGQFTPWedipnGTDVLFYEGLHGGvegegyNVSSYADLlvgvvpitnl 165 Prochlorococcus ...
ZP_00270018  87 YGETGGGrrRLYLHNDEEAapf------aqePGTFTPWed-lpESDLLFYEGLHGAvvtdtvDVAQHADLkigvvpvinv 159 Rhodospirillum r...
NP_312233    86 YGQSGKGksRKYLHTYDEAvpw------nqvPGTFTPWqplpePTDVLFYEGLHGGvvtpqhNVAQHVDLlvgvvpivnl 159 Escherichia coli
ZP_00243779  86 YGQGGRCrsRYYLHSPEEAepy------qqePGTFTPWvetpaDTDLLFYEGLHGCvktesiDMVRHADLkigvvpiinl 159 Rubrivivax gelat...
P37307       86 YGQSGKGksRKYLHTYDEAvpw------nqvPGTFTPWqplpePTDVLFYEGLHGGvvtpqhNVAQHVDLlvgvvpivnl 159 Shigella flexneri
ZP_00208632  83 YGETGRGrrRFYVHNDEEAarfah---lgvgSGEFTPWedlaeDTDCLFYEGLHGCvatrdnNVAQHVDLkigvvpvinl 159 Magnetospirillum...
Feature 1                                                                                       
NP_896878   166 ewiQKIHRDNAERGYsaeaivdtilrRMPDYINHICPQFgetDINFQRvPTVDTSNPFIcrNIPTPDESFVIiHFRKGar 245 Synechococcus sp...
NP_892903   166 ewiQKIHRDNAERGYsaetivdtilrRMPDYINHICPQFsktDINFQRiPTIDTSNPFIcrNIPTPDESFVIiHFRKGar 245 Prochlorococcus ...
ZP_00270018 160 ewiQKLHRDRAARGYsteavtdtilrRMPDYVHYICPQFtrtDVNFQRvPLVDTSNPFVarHVPSADESFVViRFRDP-- 237 Rhodospirillum r...
NP_312233   160 ewiQKLIRDTSERGHsreavmdsvvrSMEDYINYITPQFsrtHLNFQRvPTVDTSNPFAakGIPSLDESFVViHFRNL-- 237 Escherichia coli
ZP_00243779 160 ewiQKIHRDTRDRGYskeavsdvilrRMHDYVHYIVPQFgetDINFQRvPVVDTSNPFIarDIPTAGESLTViRFKNP-- 237 Rubrivivax gelat...
P37307      160 ewiQKLIRDTSERGHsreavmdsvvrSMEDYINYITPQFsrtHLNFQRvPTVDTSNPFAakGIPSLDESFVViHFRNL-- 237 Shigella flexneri
ZP_00208632 160 ewiQKIHRDTNQRGYseeavmetilrRMHDYVHYVVPQFkltDINFQRvPIVDTSDPIIarDIPTADESLVViRFRKPd- 238 Magnetospirillum...
Feature 1                                                       
NP_896878   246 ekWGIDFNYLLnmihdsfmssptsIVVNGGKmgFAMELILTPIIHRMI 293 Synechococcus sp. WH 8102
NP_892903   246 ekWGIDFQYLLgmihdsfmssptsIVVNGGKmgFAMELILTPIIHKMI 293 Prochlorococcus marinus subsp. pastoris str. CCM...
ZP_00270018 238 --KGIDFPYLLnmlndsfmsrpntIVVPGGKmeLSMQLIFTPFIWRFM 283 Rhodospirillum rubrum
NP_312233   238 --EGIDFPWLLamlqgsfishintLVVPGGKmgLAIELIMLPLVQRLM 283 Escherichia coli
ZP_00243779 238 --RGIDFPYLLsmidnsfmsrantIVVPGGKmdLAMQLILTPMILRLM 283 Rubrivivax gelatinosus PM1
P37307      238 --EGIDFPWLLamlqgsfishintLVVPGGKmgLAMELIMLPLVQRLM 283 Shigella flexneri
ZP_00208632 239 -rFRVDFPFLLqmlkdswmsrrntIVVPGGKmgLAMELILTPILRRIM 285 Magnetospirillum magnetotacticum MS-1

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