1PVD,1OVM,1ZPD


Conserved Protein Domain Family
TPP_PDC_IPDC

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cd02005: TPP_PDC_IPDC 
Click on image for an interactive view with Cn3D
Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Statistics
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PSSM-Id: 238963
Aligned: 49 rows
Threshold Bit Score: 191.594
Created: 9-Nov-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
TPP-bindingdimer interface
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:TPP-binding site [chemical binding site]
Evidence:
  • Comment:TPP = thiamine pyrophosphate or thiamine diphosphate
  • Structure:1PVD; Saccharomyces cerevisiae pyruvate decarboxylase binds TPP and divalent metal ion; contacts at 3.5A
  • Structure:1OVM; Enterobacter cloacae indolepyruvate decarboxylase binds TPP and divalent metal ion; contacts at 3.5A
  • Structure:1ZPD; Zymomonas mobilis pyruvate decarboxylase binds TPP and divalent metal ion; contacts at 3.5A
  • Citation:PMID 8604141
  • Citation:PMID 9685367

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                 #                      # #                           #
1PVD_A      345 PLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAeeidpkkRVILFIG 424 baker's yeast
P28516      411 PLRVNVLFKHIKGMLSGDSAVVAETGDSWFNCQKLRLPEGCGYEFQMQYGSIGWSVGATLGYAQAAkd----kRVIACIG 486 maize
P33287      368 PLSRKEISRQVQEMLTDKTSLFVDTGDSWFNGIQLKLPPGAKFEIEMQWGHIGWSIPAAFGYALRHpd----rHTIVLVG 443 Neurospora crassa
NP_925003   358 PMTVLRLFQQLNAFLDDETIVVADPGDALFAGADLFIPGKTRFLAPAYYASLGFAVPAALGAQMADar----lRPLVLVG 433 Gloeobacter viol...
ZP_00160493 352 KISMSGLLYELNQFIDSNTLLVTDVGDALFAADDIQTQQGTSFLCPAFYASMGFGVPGVIGAQLADps----rRAIALVG 427 Anabaena variabi...
YP_095188   362 PLSSRYLFGQIQKMLSDKKALLAETGDSWFNCMRLSLPEGCPFEIQMQYGSIGWSVGALLGMQAALhn---qkRVIACIG 438 Legionella pneum...
YP_113473   358 PMTIARLVERLDRALTSDMIVVCDVGDCLFAATDLRVHERSEFLASAFYTSMGFAVPAALGAQIARpd----hRALILVG 433 Methylococcus ca...
NP_195033   408 PLRVNTMFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQASpe----kRVLAFIG 483 thale cress
BAE63978    371 ALTVRSLLSGVQAMLQENSKLVVDTGDTWFAASHVELPDGVDIYMQLPYASIGWSVPATLGAQVAHph----gRVVLMVG 446 Aspergillus oryzae
BAC44481    359 KITYNRLQVALNNYFVEKDILVSDVGTCTFLSQYIQLKKDMKFIMQPLWASIGFSFPASIGAQIASn-----sKVVNILG 433 Mycoplasma penet...
Feature 1       ###                        # #####                                              
1PVD_A      425 DGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGpkaQYNEIQGWDHLSLLPTFga------------------- 485 baker's yeast
P28516      487 DGSFQVTAQDVSTMLRCGQKSIIFLINNGGYTIEVEIHDg--PYNVIKNWDYTGLVNAIhns-----------------e 547 maize
P33287      444 DGSFQVTAQEVSQMVRFKVPITIMLINNRGYTIEVEIHDg--SYNKIKNWDYAMLVEAFnst-----------------d 504 Neurospora crassa
NP_925003   434 DGAFQMSGLELSTIARFGLDPIVVLLNNRGYGTERPMQDg--SFNDVLNWNYSRLPELLg-------------------- 491 Gloeobacter viol...
ZP_00160493 428 DGAFHMTGMELLTAQRLRLNPIVIVINNGSFASLQAMGHqeaAFVQIPTMDYAQLANVL--------------------- 486 Anabaena variabi...
YP_095188   439 DGSFQMTAQEISTMIRYGYKPIIFLMNNACYTIEVQIHDg--PYNVINNWRYAELVNVFrge-----------------q 499 Legionella pneum...
YP_113473   434 DGAFQMTGTELSTHARLGLAPIVVVLDNRGYSTERFILDg--AFNDIADWRFHRLGEVFg-------------------- 491 Methylococcus ca...
NP_195033   484 DGSFQVTVQDISTMLRNGQKTIIFLINNGGYTIEVEIHDg--PYNVIKNWNYTGLVDAIhng-----------------e 544 thale cress
BAE63978    447 DGAFQMTAQEISTMVRMKLNPIIFLFNNLGYKTETAVHEg--SYNYIANWDYTKLATSFldkphahppspyatdkpgdde 524 Aspergillus oryzae
BAC44481    434 DGAFNMVFNELITVINKQIPITTILLNNNGYTIEKVIHGdgkPYNELPKVNYSQLIKAFdpe-----------------g 496 Mycoplasma penet...
Feature 1                                                     
1PVD_A      486 kDYETHRVATTGEWDKLTQdksfndnskIRMIEIMLPVFDAPQNLV 531 baker's yeast
P28516      548 gNCWTMKVRTEEQLKEAIAtvtgakkdcLCFIEVIVHKDDTSKELL 593 maize
P33287      505 gHAKGLLANTAGELADAIKvaes-hkegPTLIECTIDQDDCSKELI 549 Neurospora crassa
NP_925003   492 -TGRGFEVSTEDQLAAALHearr-hrgsFSLIDVHLEPGDLSPALR 535 Gloeobacter violaceus PCC 7421
ZP_00160493 487 -GGHGFVIHTSTQLQQALQtaqn--sktFSILDVHLSPDDVSPALQ 529 Anabaena variabilis ATCC 29413
YP_095188   500 sNAKSFVVKTNKELLTAIKqaek--tdaLCFIEVFLDKDDCNKNLL 543 Legionella pneumophila subsp. pneumophila str. Phi...
YP_113473   492 -PLQGYDAPDEAAFENALSealv-nrnmPSLINVRLSPGDASIAMK 535 Methylococcus capsulatus str. Bath
NP_195033   545 gNCWTAKVRYEEELVEAITtattekkdcLCFIEVILHKDDTSKELL 590 thale cress
BAE63978    525 mPVFAEKVRTQADLLRAMErvsa-esdkLAFLECCIQPDNMTPELR 569 Aspergillus oryzae
BAC44481    497 eKSISLRVTNEIELQEALVisrs--sdkFVFIEVCLEQNDIPEALK 540 Mycoplasma penetrans HF-2

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