Conserved Protein Domain Family
Nitrogenase_VFe_alpha

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cd01977: Nitrogenase_VFe_alpha 
Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein which has a practically identical structure in all three systems, it contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction. The V-nitrogenase requires an iron-vanadium cofactor (FeVco), the iron only-nitrogenase an iron only cofactor (FeFeco). These cofactors are analogous to the FeMoco. The V-nitrogenase has P clusters identical to those of MoFe. In addition to N2, nitrogenase also catalyzes the reduction of a variety of other substrates such as acetylene The V-nitrogenase differs from the Mo-nitrogenase in that it produces free hydrazine, as a minor product during dinitrogen reduction and, ethane as a minor product during acetylene reduction.
Statistics
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PSSM-Id: 238936
Aligned: 9 rows
Threshold Bit Score: 738.098
Created: 29-Oct-2004
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAA52044     41 PGSLSERGCSYCGAKLVIGGVLKDTIQMIHGPIGCAYDTW-HTKRYPSdn----------gnFQLKYVWSSDMKESHVVF 109 Anabaena variabilis
CAE26821     41 PGTLSERGCAFCGAKLVIGGVLKDTIQMIHGPIGCAYDTW-HTKRYPSdn----------ghFQMKYVWSTDMKESHIVF 109 Rhodopseudomonas...
ZP_00416683  41 PGTLSERGCAFCGAKLVIGGVLKDTIQMIHGPLGCAYDTW-HTKRYPTdn----------ghFNMKYVWSTDMKESHVVF 109 Azotobacter vine...
YP_426482    41 PGSISERGCAYCGAKHVIGQPMKDVIHISHGPIGCTYDTW-QTKRYISdn----------nnFQLKYTYATDVREKHIVF 109 Rhodospirillum r...
AAM04635     41 AGSLSERGCSYCGAKLVIGGVIKDCIQMIHGPVGCAYDTW-HTKRYPSdn----------dnFQLKYIWSSDTKEKHIVF 109 Methanosarcina a...
AAM04629     41 PGTISERGCAYCGAKHVIGAPMKDVIHVSHGPVGCTYDTW-HTKRYISdn----------dnFQLKYTFATDMKEKHVVF 109 Methanosarcina a...
Q46082       41 PGSISERGCAYCVAKHVIGTPMKDVIHISHGPVGCTYDTW-QTKRYISdn----------dnFQLKYTYATDVKEKHIVF 109 Clostridium hung...
NP_276676    40 PGCMTERGCAFAGAKGVITGAIKDALHVIHSPVGCTAYGY-GTKRYPTsqempdgslfpienFNLKYITGTNLTETDVVF 118 Methanothermobac...
NP_987976    41 PGSMTERGCAFAGVKGVITGAIKDVLHVVHSPVGCTAYGNgTTKRYPTrpempdgsvfpvenFNLKHIVGTDLTESDVVF 120 Methanococcus ma...
CAA52044    110 GGEKQLGKSIREAFKEFPDIKRMIVYTTCATALIGDDIKAVVKSAQQElgdvDIFCVECPGFAGVSQSKGHHVLNIAWIN 189 Anabaena variabilis
CAE26821    110 GGDKRLEKSIHEAFDEMPHIKRMIVYTTCPTALIGDDIKATVKRVMEVrpdvDIFTCECPGFAGVSQSKGHHVLNIGWVN 189 Rhodopseudomonas...
ZP_00416683 110 GGEKRLEKSMHEAFDEMPDIKRMIVYTTCPTALIGDDIKAVAKKVMKDrpdvDVFTVECPGFSGVSQSKGHHVLNIGWIN 189 Azotobacter vine...
YP_426482   110 GAEKLLKQNILEAFKAFPDIKRMTIYQTCATALIGDDIDAIASEVMDElpdvDIFVCNSPGFAGPSQSGGHHKINIAWVN 189 Rhodospirillum r...
AAM04635    110 GAEKQLKKAIMEAFQEFPAIKRMFVYTTCTTALIGDNPKAVCREVQEEledvDIFVVECPGFAGVSQSKGHHELNIGWMR 189 Methanosarcina a...
AAM04629    110 GAEKMLKQNIIDCFKAFPHIKRMTIYQTCASALIGDDIAAVAKKVMAEmpdvDIFVCNAPGFGGPSQSGGHHKINIAWID 189 Methanosarcina a...
Q46082      110 GAEKLLKQNIIEAFKRFPQIKRMTIYQTPCTALIGDDINAIAEEVMEEmpevDIFVCNSPGFAGPSQSGGHHKINIAWIN 189 Clostridium hung...
NP_276676   119 GGMDKLKRCIIEAAKEFPEANAVYTYATCTTGLIGDDIEAVSREVSEEig-kDVVAINAPGFAGPTQSKGHQVANYTLFE 197 Methanothermobac...
NP_987976   121 GGMNKLKKVIREASKEFPFVNAIYVYATCTTGLIGDDLDAVCKEMQAElg-kDVVAFNAPGFAGPTQSKGHHVGNYTIFE 199 Methanococcus ma...
CAA52044    190 EKVGTLEPEITSpyTINVIGDYNIQGDTFVLEKYMEKMGIQIIAHFTGNGTYDSLRGMHRAQLNVTNCARSAGYIANELK 269 Anabaena variabilis
CAE26821    190 EKVGTVEPEITSpyTINFIGDYNIQGDTQLLQQYWDKLGIQVIAHFTGNANYDDLRAMHRAQLNVVNCARSAGYIANELK 269 Rhodopseudomonas...
ZP_00416683 190 EKVETMEKEITSeyTMNFIGDFNIQGDTQLLQTYWDRLGIQVVAHFTGNGTYDDLRCMHQAQLNVVNCARSSGYIANELK 269 Azotobacter vine...
YP_426482   190 QKVGTVEPEITSdyVINYVGEYNIQGDQEVMQDYFNRMGIQILSTFTGNGSYDGLRAMHRAHLNVLECARSAEYICNELR 269 Rhodospirillum r...
AAM04635    190 DKIGTLEPEITSeyTINVIGDYNIQGDTYVLQKYLDKMGIQVIAHFTGNVTYDQLRCMHRAKLNVVNCARSAGYIANELK 269 Methanosarcina a...
AAM04629    190 QKVGTYEPEIKSkyVINYVGDYNIQGDAEIMVDYFQRMGIQVLSTFTGNGSYDDLRGMHLAHLNVLECARSAEYICNELR 269 Methanosarcina a...
Q46082      190 QKVGTVEPEITGdhVINYVGEYNIQGDQEVMVDYFKRMGIQVLSTFTGNLSYDGLRAMHRAHLNVLECARSAEYICNELR 269 Clostridium hung...
NP_276676   198 NLVGTAEPPVVTdyDVNLIGEYNIDGDLWVLKRYFEEMGINVLSTFTGDCCHDEIKWMHRAKLSLVRCQRSATYIARLLE 277 Methanothermobac...
NP_987976   200 KLVGTKEPPKTTdyDINLIGEYNIDGDYWVLEKYFEDMGINVLSKFTGDATHGELCWMHKAKLSLVRCQRSATYVAKLIE 279 Methanococcus ma...
CAA52044    270 KRYGIPRLDVDTWGFDYCQEALRKIGAFFGIEDRAEAVIAEEIAKYQEKMDWYKERLSGKKVCIWTGGPRLWHWTKALED 349 Anabaena variabilis
CAE26821    270 KRYGIPRLDIDSWGFNYMAEGIRKVCAFFGIEEKGEALIAEEYAKWKPQLDWYKERLKGTKMAIWTGGPRLWHWTKSVED 349 Rhodopseudomonas...
ZP_00416683 270 KRYGIPRLDIDSWGFNYMAEGIRKICAFFGIEEKGEELIAEEYAKWKPKLDWYKERLQGKKMAIWTGGPRLWHWTKSVED 349 Azotobacter vine...
YP_426482   270 VRYGIPRLDIDGFGFEPLSDSLRKIGLFFGIEDRAQAIIDEETAKWKPQLDWYKERLRGKKVCLWPGGSKLWHWAHVIQE 349 Rhodospirillum r...
AAM04635    270 RVYDIPRMDVDTWGFEYVKVALRKIGAFFGLEDKAEEVIAEEVAKYEGKLDWYKERLKGKQICIWTGGPRLWHWTKALED 349 Methanosarcina a...
AAM04629    270 KRYGTPRLDIDGYGFEPLSASLMKVAMFFGLEKEAQAIIDEETARWRPELNWYAKRLKGKKICLWPGGSKLWHWAHVIEE 349 Methanosarcina a...
Q46082      270 VRYGIPRLDIDGFGFKPLADSLRKYGMFFGIEDRRKAIIDEEVARWKPELDWYKERLMGKKVSVWPGGSKLWHWAHVIEE 349 Clostridium hung...
NP_276676   278 ERYNVPYMKVDFFGIEYCKRNLMATGEYFGIPERAEEVIKDRMEKIGPEIEYLRNKLAGKKVWVFSGGPKNWHLPRPLED 357 Methanothermobac...
NP_987976   280 EKYGVPYLKVDFFGPEYCAENLRAVGKYFGKEIEAEAVIKKEMEKIQPELDFYKSKLQGKKIWISAGGPKSWHLSKPIEQ 359 Methanococcus ma...
CAA52044    350 DLGMQVVSMSSKFGHQEDFEKVIARGQEGTIYIDDGNELEFFEVLEMIRPDVVLTGPRVGALVKKLHLPYVNGHGYHNGP 429 Anabaena variabilis
CAE26821    350 DLGVQVVAMSSKFGHQEDFEKVIARGQSGTYYVDDGNELEFFEIIDLVKPDVIFTGPRVGELVKKLHIPYVNGHAYHNGP 429 Rhodopseudomonas...
ZP_00416683 350 DLGVQVVAMSSKFGHEEDFEKVIARGKEGTYYIDDGNELEFFEIIDLVKPDVIFTGPRVGELVKKLHIPYVNGHGYHNGP 429 Azotobacter vine...
YP_426482   350 EMGLNVVSLYTKFGHQGDMEKGIARCGEGALAIDDPNELEGLEALEMLKPDIILTGKRPGEVAKKVRVPYLNAHAYHNGP 429 Rhodospirillum r...
AAM04635    350 DLGMEVVAMSSKFGHQEDFEKVIARGRIGTIYIDDGNELEFFEVLDNIHADLIFTGPRVGDLVKKLHIPYINGHAYHNGP 429 Methanosarcina a...
AAM04629    350 EMGVKVVSVYSKFGHQGDFEKGVARCSEGALAIDDPNELEGLEAMEMLQPDCVLTGVRPGEVSKKMRIPYLNIHGYHNGP 429 Methanosarcina a...
Q46082      350 EMGLKVVSVYTKFGHQGDMEKGMPRCGEGTLAIDDPNELEGLEALEMLKPDIILTGKRPGEVAKKVRVPYLNAHAYHNGP 429 Clostridium hung...
NP_276676   358 ELGMEVVAVSTMFEHEDGYEKIKKRVGENTVIVDDPNSLELEEIIEKYRPDIILSGIKEKYLAHKLGVPCVLIHSYENGP 437 Methanothermobac...
NP_987976   360 YLGMDVVALSGLFEHEDGYEKMQERAKDGTIIIDDPNTLEMEEVVEKYQPEIVLGGIKEKYFFHKLGVPSVMIHSYENGP 439 Methanococcus ma...
CAA52044    430 YMGFEGAVNMARDLYNAIYSPLMQLA 455 Anabaena variabilis
CAE26821    430 YMGFEGFVNLARDMYNAVHNPLLKLA 455 Rhodopseudomonas palustris CGA009
ZP_00416683 430 YMGFEGFVNLARDMYNAVHNPLRHLA 455 Azotobacter vinelandii AvOP
YP_426482   430 YKGYEGWVRFARDIYNAIYSPIFQLS 455 Rhodospirillum rubrum ATCC 11170
AAM04635    430 YMGFEGAVNMARDMYNAIYSPMWKLA 455 Methanosarcina acetivorans C2A
AAM04629    430 YKGYEGWVRLARDLYNAIYSPIHQLS 455 Methanosarcina acetivorans C2A
Q46082      430 YKGFEGWVRFARDIYNAIYSPIHQLS 455 Clostridium hungatei
NP_276676   438 YIGFEGFLNLARDMYASIYSPVWDLL 463 Methanothermobacter thermautotrophicus str. Delta H
NP_987976   440 YIGFEGFVNMARDIYTAIYNPAWKLM 465 Methanococcus maripaludis S2
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