1QH8,2AFK,1MIO


Conserved Protein Domain Family
Nitrogenase_MoFe_alpha

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cd01976: Nitrogenase_MoFe_alpha 
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Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Statistics
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PSSM-Id: 238935
Aligned: 18 rows
Threshold Bit Score: 716.807
Created: 29-Oct-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:Alpha subunit P cluster binding residues
Evidence:
  • Comment:MoFe protein is an alpha2beta2 heterotetramer. Each alphabeta dimer has an iron-sulfur P cluster which bridges the alpha and beta subunit.
  • Structure:1QH8_C, Klebsiella pneumoniae, MoFe alpha2beta2 heterotetramer showing contacts of alpha subunits with P clusters at 3.5 A.
  • Structure:2AFK_C, Azotobacter vinelandii, MoFe alpha2beta2 heterotetramer showing contacts of alpha subunits with P clusters at 3.5 A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       # #                    # ##                                     
1QH8_C       45 IISNRKSQPGVMTVRGCAYAGSKGVVFGPIKDMAHISHGPVGCGQYSRAGRRNYYtgv-sgvDSFGTLNFTSDFQERDIV 123 Klebsiella pneum...
1MIO_A       36 IVANTRTVPGIITARGCAYAGCKGVVMGPIKDMVHITHGPIGCSFYTWGGRRFKSkpengtgLNFNEYVFSTDMQESDIV 115 Clostridium past...
ZP_00558850  45 VKSNGKTVPGIMTARGCAYAGAKGVVWGPVKDIVHISHGPVGCGFYSWANRRNLAege-vgiDNFVPFQFTSDFQESDII 123 Desulfitobacteri...
AAB36877     48 VKSNIKSRPGVMTIRGCAYAGSKGVVWGPVKDLVHISHGPVGCGQYSWATRRNYAhgh-lgvNNFTAMQVTTDFQEKDIV 126 Frankia sp.
CAE10458     49 VRSNKKSAPGVMTQRGCAYAGSKGVVWGPVKDMVHISHGPIGCGQYSRGGRRNYYigt-tgvDTFVTVNFSTDFQERDIV 127 Wolinella succin...
AAX73206     15 IKSNLKSRPGVMTARGCAYAGSKGVVWGPIKDMVHISHGPIGCGQYSWGTRRNYAngi-lgiNNFTAMQITSDFQEKDIV 93  Paenibacillus ma...
P25313       46 VKSNIKSIPGVMTIRGCAYAGSKGVVWGPIKDMIHISHGPVGCGYYSWSGRRNYYvgd-tgvDKLGTMHFTSDFQEKDIV 124 Azospirillum bra...
NP_662420    44 VQANVRTVPGIITQRGCAYAGCKGVVLGPTRDIVNIVHGPIGCSFYAWLTRRNQTrpetpehENYITYCFSTDMQEEHVV 123 Chlorobium tepid...
AAS94437     49 IEANTRTVPGIITQRGCCYAGCKGVVIGPYGDMVHIVHGPVGCSFYAWLTRRNQFrargeagKNYLSYCFTTDMQDEDII 128 Desulfovibrio vu...
AAW39637     44 IAANARTVPGLITMRGCAYAGCKGVILGPTRDVLSITHGPIGCGFYSWLTRRNQTrppkpedENFMTYCLSTDMQESEIV 123 Dehalococcoides ...
Feature 1                                    #                               #                  
1QH8_C      124 FGGDKKLSKLIEEMELLFPltkGITIQSECPVGLIGDDISAVANASSKALd-KPVIPVRCEGFRGVSQSLGHHIANDVVR 202 Klebsiella pneum...
1MIO_A      116 FGGVNKLKDAIHEAYEMFHp-aAIGVYATCPVGLIGDDILAVAATASKEIg-IPVHAFSCEGYKGVSQSAGHHIANNTVM 193 Clostridium past...
ZP_00558850 124 YGGDKKLEKIIEEVVELFPnakGVSVLSECPVGLIGDDIESVARRMTEKTq-RPVVPVRCEGFRGISQSLGHHIANDAIR 202 Desulfitobacteri...
AAB36877    127 FGGDPKLEQVCDEIVEMFPlakGISVQSECPIGLIGDDIEAVSKKSAKKLg-IPVIPVRCEGFRGVSQSLGHHIANDAVR 205 Frankia sp.
CAE10458    128 FGGDKKLQQAIDEINDLFPlnhGITVQSECPIGLIGDDIQAAARKKSAETg-KTVVAVSCEGFRGVSQSLGHHIANDTIR 206 Wolinella succin...
AAX73206     94 FGGDKKLEVICREIKEMFPlakGISVQSECPVGLIGDDIGAVAKKMTQELg-IPVIPVRCEGFRGVSQSLGHHIANDAIR 172 Paenibacillus ma...
P25313      125 FGGDKKLHKVIEEINELFPlvnGISIQSECPIGLNGDDIEGVSKAKSEELg-KPVVPVRCEGFRGVSQSLGHHIANDVIR 203 Azospirillum bra...
NP_662420   124 FGGEKKLKVAIQEAYDLFHp-kAIAIFSTCPVGLIGDDVHAVAREMKEKLgdCNVFGFSCEGYRGVSQSAGHHIANNGVF 202 Chlorobium tepid...
AAS94437    129 FGGEKKLAQAIREAAAIFRp-eAISVHATCPVGLIGDDIQAVARELSKETg-IPVMAFNCEGYKGVSQSAGHHIANNKIF 206 Desulfovibrio vu...
AAW39637    124 FGGEKKLAQAIEEAYQLFKp-kTIVVHATCPVGLIGDDIHQVTRAAQEKLg-IKVFGFSCEGYKGVSQSAGHHIANNQIF 201 Dehalococcoides ...
Feature 1                                                                                       
1QH8_C      203 Dwilnnre--gqpfettPYDVAIIGDYNIGGDAWASRILLEEMGLRVVAqwsgdgTLVEMENTPFVKLNLVHCYRSMNYI 280 Klebsiella pneum...
1MIO_A      194 Tdiigkg-----nkeqkKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNAtltgdaTYEKVQNADKADLNLVQCHRSINYI 268 Clostridium past...
ZP_00558850 203 Dhiigkg----pereigPYDIGIIGDYNIGGDAWASKKILEEIGLNVVNiwtgdsTLEMLQNGHLVKLNLIHCYRSMNYM 278 Desulfitobacteri...
AAB36877    206 Dhvlgtgg---dtfeqtPYDVALIGDYNIGGDAWASRRILEEMGLRVLAqwsgdgTINEMASTHLSKLNLIHCYRSMNYI 282 Frankia sp.
CAE10458    207 DimfplsdevnkdfvatPYDVAIIGDYNIGGDAWSSRILLEEMGLRVIAqwsgdsTFKEITAGPKAKLNLLHCYRSMNYV 286 Wolinella succin...
AAX73206    173 Dflmgrm----eleecgPYDVSIIGDYNIGGDAWASRILLEEMGLRVIAqwsgdgTINELGIAHKSKLNLIHCHRSMNYM 248 Paenibacillus ma...
P25313      204 DwilpkktepkegfvstPYDVTIIGDYNIGGDAWASRILLEEIGLRVIAqwsgdgTLAELENQPKAKVNLIHSYRSMNYI 283 Azospirillum bra...
NP_662420   203 Khmvgnn----nevkpgKFKLNLLGEYNIGGDAFEIERLLEKCGITLVAsfsgnsTVGAIENAHTADLNVIMCHRSINYM 278 Chlorobium tepid...
AAS94437    207 Dmalgtr-----ereagRFSVNVLGEYNIGGDAYEIERVLEKCGIEVVAtfsgnsVYEDMCTAHSANLNLVMCHRSINYL 281 Desulfovibrio vu...
AAW39637    202 Khmvgtd----ntaspsPYRVNLLGEYNIGGDAFVIEDLFARCGFELVStfcgnsDHDSMCRSHTAELNLVMCHRSINYM 277 Dehalococcoides ...
Feature 1                                                                                       
1QH8_C      281 ARHMEEKHQIPWMEYNFFGPTKIAESLRKIADQFddt-iraNAEAVIARYEGQMAAIIAKYRPRLEGRKVLLYMGGLRPR 359 Klebsiella pneum...
1MIO_A      269 AEMMETKYGIPWIKCNFIGVDGIVETLRDMAKCFddpeltkRTEEVIAEEIAAIQDDLDYFKEKLQGKTACLYVGGSRSH 348 Clostridium past...
ZP_00558850 279 ANYMEETYGTPWLEFNFFGPTKIKESLLNIAAHFdds-ireNTQRVIAKYEAQMQKVIDIYRPRLAGKKVMLYVGGLRPR 357 Desulfitobacteri...
AAB36877    283 CTTMEERFGTPWTEFNFFGPSKIISSMRKIAEFFdde-ikaKTEAAIARYQVRFDEITKAFRPRLEGKRVMLAVAGLRPR 361 Frankia sp.
CAE10458    287 ARHMEKEYGIPWMEYNFFGPSKIEASLRAIAKHFgpe-iekKAEEVIAKYKAITEAVIAKYKPRLEGKTVMLYVGGLRSR 365 Wolinella succin...
AAX73206    249 CTTMEEEYGIPWMEYNFLGPTKTVESLRAIAARFdet-iqaNCEEVIARYMVEMEAVIRKYRPRLEGRRSCSLIGGLRAR 327 Paenibacillus ma...
P25313      284 ARHMEEKFGIPWMEYNFFGPSQIAESLRKIAALFddt-ikeNAEKVIAKYQPMVDAVVGDAALRAHGTKGRVPLKPLGPR 362 Azospirillum bra...
NP_662420   279 GDMMETKYGIPWMKVNFVGAESTAKSLRKIAEYFgdeelkaKVEEVIAEEVPAVKAIIDEIRPRTEGKTAMLFVGGSRAH 358 Chlorobium tepid...
AAS94437    282 AEMMETKFGIPWMKVNFIGMRSMSQSLRKIARYFddaaltaRIESVIAEEEARAETALAAYMPGLEGKTAMLFVGGSRAH 361 Desulfovibrio vu...
AAW39637    278 ADMMETKYGIPWIKVNFIGAEATAKSLRKIARYFgdeklieQTERVIEEEMPAVSEARQLYQERCRGKKVMLFVGGSRAH 357 Dehalococcoides ...
Feature 1                                                                                       
1QH8_C      360 HVi--GAYEDLGMEIIAAGYEFAHNDDYDRTLPDlk-------------------------------------------- 393 Klebsiella pneum...
1MIO_A      349 TYm--NMLKSFGVDSLVAGFEFAHRDDYEGREVIptikidadsknipeitvtpdeqkyrvvipedkveelkkagvplsay 426 Clostridium past...
ZP_00558850 358 HVv--GAYEDLGMEIIGTGYEFAHKEDYERTYPQlk-------------------------------------------- 391 Desulfitobacteri...
AAB36877    362 HTi--GAYEDLGMEVVGTGYEFAHKDDYTRTYAMlk-------------------------------------------- 395 Frankia sp.
CAE10458    366 HIi--GAYEDLGMEVIGLGYEFAHDDDYQRTKEEvs-------------------------------------------- 399 Wolinella succin...
AAX73206    328 HTi--GAYEDLGMEIVATGYEFAHKDDYEKTLPDlk-------------------------------------------- 361 Paenibacillus ma...
P25313      363 HRpivDAYHDLGMEIVGTGYEFAHNDDYQRTQHYvk-------------------------------------------- 398 Azospirillum bra...
NP_662420   359 HYq--DLFSELGMTTIAAGYEFAHRDDYEGREVLpkikidadsknieelkvtadpelynprkskaeleelkakgleingy 436 Chlorobium tepid...
AAS94437    362 HYm--HLMRDLGMEPLVAGFEFAHRDDYEGRRVIptirvdadsknieelkvtadperyrpr-ldpayreqleregllssy 438 Desulfovibrio vu...
AAW39637    358 HYq--ELFKELGMEVVAAGYEFAHRDDYEGRRVLpsitvdadsrnieeltvekdperykervspekcaelaangvefkdy 435 Dehalococcoides ...
Feature 1                                                                                       
1QH8_C      394 --------eGTLLFDDASSYELEAFVKALKPDLIGSGIKEKYIFQKMGVPFRQMHSWdysGPYHGYDGFAIFARDMDMTL 465 Klebsiella pneum...
1MIO_A      427 ggmmkemhdGTILIDDMNHHDMEVVLEKLKPDMFFAGIKEKFVIQKGGVLSKQLHSYdynGPYAGFRGVVNFGHELVNGI 506 Clostridium past...
ZP_00558850 392 --------eGTLIYDDVSALELEEFVKDLKPDLVGSGIKEKYVFEKMGLPFRQMHSWdysGPYHGYDGFPIFARDMDMAV 463 Desulfitobacteri...
AAB36877    396 --------eGTVLYDDPTAFELEEFARFLKPDLMGAGVKEKYVFHKMGIPFRQMHSWdysGPYHGVDAFAVFARDMDIAI 467 Frankia sp.
CAE10458    400 --------gSVLVYDDVNEYELEKFVDKLRPDLVASGVKEKYVFQKMGLPFRQMHSWdysGPYHGYDGFAIFARDIEMAV 471 Wolinella succin...
AAX73206    362 --------eGAILYDDPTAYELEELAQRLDIDLMGAGVKEKYVYHKMGIPFRQMHSWdysGPYHGFDGFKIFARDMDMTV 433 Paenibacillus ma...
P25313      399 --------eGTLIYDDVTAFELEKFVELMRPDLVASGIKEKYVFQKMGLPFRQMHSWdysGPYHGYDGFAIFARDMDLAI 470 Azospirillum bra...
NP_662420   437 egmmkqmmkKTLVVDDISHYESEKLIEMYKPDIFCAGIKEKYVVQKMGVPLKQLHSYdygGPYTGFKGAVNFYKDIDRMV 516 Chlorobium tepid...
AAS94437    439 egmwddmgeGTLVIDDVSHVEIEKLIHRMNPDIICSGIKDKYVIEKFGVPCKQLHNYdysGPYAGYEGAVNFARDVYAMI 518 Desulfovibrio vu...
AAW39637    436 agmmpemeaGSLTIDEPSHHETFRLLELYKPDLYCAGVKEKYAVQKTGIPCLQLHSYdygGPFAGFEGAINFYKDVDRLV 515 Dehalococcoides ...
Feature 1         
1QH8_C      466 NN 467 Klebsiella pneumoniae
1MIO_A      507 YT 508 Clostridium pasteurianum
ZP_00558850 464 NS 465 Desulfitobacterium hafniense DCB-2
AAB36877    468 NS 469 Frankia sp.
CAE10458    472 NS 473 Wolinella succinogenes
AAX73206    434 NS 435 Paenibacillus massiliensis
P25313      471 NN 472 Azospirillum brasilense
NP_662420   517 NN 518 Chlorobium tepidum TLS
AAS94437    519 HS 520 Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
AAW39637    516 SS 517 Dehalococcoides ethenogenes 195

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