2AFK,1QH8,1MIO,1G20


Conserved Protein Domain Family
Nitrogenase_MoFe_beta

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cd01974: Nitrogenase_MoFe_beta 
Click on image for an interactive view with Cn3D
Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Statistics
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PSSM-Id: 238934
Aligned: 21 rows
Threshold Bit Score: 731.771
Created: 15-Nov-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:Beta subunit P cluster binding residues
Evidence:
  • Comment:MoFe protein is an alpha2beta2 heterotetramer. Each alphabeta dimer has an iron-sulfur P cluster which bridges the alpha and beta subunit.
  • Structure:2AFK; Azotobacter vinelandii, MoFe protein/Av1 alpha2beta2 heterotetramer showing beta subunit (chains B and D) contacts with P-clusters at 3.5 A
  • Structure:1MIO, Clostridium pasteurianum, alpha2beta2 heterotetramer showing beta subunit (chains B and D) contacts with P-clusters at 3.5 A
  • Citation:PMID 1529354

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  # #                   # ##  ##                                       
2AFK_B       58 REALTVNPAKACQPLGAVLCALGFEKTMPYVHGSQGCVAYFRSYFNRHFREPVSCVSDSMTEDAAVFGGQQNMKDGLQNC 137 Azotobacter vine...
1MIO_B       12 RKALRINPAKTCQPVGAMYAALGIHNCLPHSHGSQGCCSYHRTVLSRHFKEPAMASTSSFTEGASVFGGGSNIKTAVKNI 91  Clostridium past...
AAW39638     13 REALTINPAKTCQPIGAMYAALGIHNCLPHSHGSQGCCAYHRSTLTRHYKEQVLSGTSSFTEGASVFGGQANLLQAIDNI 92  Dehalococcoides ...
CAE10457     58 REAITINAAKACQPLGAVMVALGFENTMPYVHGSHGCVAYFRSYFTRHFKEPTPCVSDSMTEDAAVFGGLQNMIDGLANC 137 Wolinella succin...
AAS94438     12 RSALRVNPAKTCQPIGAMYAALGIHGCLPHSHGSQGCCSYHRSHLTRHFREPVMASTSSFTEGASVFGGGPNLRQALKTI 91  Desulfovibrio vu...
AAM72763     13 REGLTINPAKTCQPIGAMYAALGIHGCLPHSHGSQGCCAYHRSTLTRHYKEPVMAATSSFTEGASVFGGQANLLSAIETI 92  Chlorobium tepid...
ZP_00909727  12 RKAITINPSKTCQPVGAMYAALGVHGCMPHSHGSQGCCSYHRTVLSRHFKEPAIATSSSFSEGACVFGGGSNIKTAVKNI 91  Clostridium beij...
AAR36213     39 RQALVINPAHACQPLGAELVAHAFEGTLPFVHGSQGCASYYRSTLNRHFREPAPAVSDAMTEDGAVFGGQNNLHEGLENA 118 Geobacter sulfur...
ZP_00558851  24 REKLVINPAKACQPLGALLCALGIEGCLPFTHGSQGCTAYFRSTLSRHFREPVASVSDSMTEDSAVFGGQANFIEGLKNA 103 Desulfitobacteri...
BAD95755     31 RKALSINPAKACQPLGALLCALGIEGCLPFVHGSQGCAAYFRNTLNRHFREPIPTVSDSMTEDSAVFGGQNNLIEGLKNA 110 Heliobacterium c...
Feature 1                    ##                                  #                              
2AFK_B      138 KATYKPdMIAVSTTCMAEVIGDDLNAFINNSKkegfipdefPVPFAHTPSFVGSHVTGWDNMFEGIARYFTlksmddkvv 217 Azotobacter vine...
1MIO_B       92 FSLYNPdIIAVHTTCLSETLGDDLPTYISQMEdagsipegkLVIHTNTPSYVGSHVTGFANMVQGIVNYLSentg----- 166 Clostridium past...
AAW39638     93 FSVYNPdIIAVHTTCLSETIGDDITQIISKAKienhipqgkLVIHTNTPSYAGSHVTGFANMVKSMVQYLSepaeg---- 168 Dehalococcoides ...
CAE10457    138 YAMYKPeMIAVSTTCMAEVIGDDLQAFVENARsagsipadyPVPYANTPSFKGSHITGYDNMMYSIITQLSnvsqs---a 214 Wolinella succin...
AAS94438     92 FQVYDPdMVAVHTTCLSETIGDDIPTITKVAMedgtvpqgkKVIHCNTPSYVGSHVTGFSNMVEGMVNYLAagtgk---- 167 Desulfovibrio vu...
AAM72763     93 FTVYDPeVIAVHSTCLSETIGDDLQQITKKASddgkipegkYVIYASTPSYVGSHITGYANMVTSMTEQFAvstg----- 167 Chlorobium tepid...
ZP_00909727  92 FDMYNPeIIAVHTTCLSETIGDDLKGFIDAIDipe----gkYVLHANTPSYVGSHITGFSNMVTGFIKGLSkttg----- 162 Clostridium beij...
AAR36213    119 IALYKPkMVAVFTSCMPEIIGDDLTAFLKNARnkgiipadmPTPYANTPSFNGSHIHGYDAMLLSILQTLTagkqve--g 196 Geobacter sulfur...
ZP_00558851 104 YTVYNPkVIAVYTSCMAEVIGDDISSFLGNAKdqgavpmdfPVALANTPSFKMSHIAGYDIMLKGLIECLAtprqe---d 180 Desulfitobacteri...
BAD95755    111 YQVYKPsMMAVFTTCMAEVIGDDLNAFINNARaaesipkdfPIAFAQTPSFVGSHITGFDNMLKALLQSLAdtrhg---k 187 Heliobacterium c...
Feature 1                                                                                       
2AFK_B      218 gsnkKINIVPGFETYLgnFRVIKRMLSEMGVGYSLLSDPEEVLDTPADgqFRMYa-GGTTQEEMKDAPNALNTVLLQPWH 296 Azotobacter vine...
1MIO_B      167 akngKINVIPGFVGPAd-MREIKRLFEAMDIPYIMFPDTSGVLDGPTTgeYKMYpeGGTKIEDLKDTGNSDLTLSLGSYA 245 Clostridium past...
AAW39638    169 mperRANIIPGWVEPAd-MREIKRLVEAMGINYIMFPDTSGVLDTPLTghSELFpaGGTTIKQLRDTGRSKITFALGEAA 247 Dehalococcoides ...
CAE10457    215 dkkdRINIIPGFEPYIgsLREVKEIVEAFGADYIMLGDHSEQWDMPAGk-YQMFs-GGTKLDDARDAGASKVTITLQKYT 292 Wolinella succin...
AAS94438    168 qaagQVNVIPGFVEPSd-MRKIKGMLAQMGVDGVVFPDTSDVLDTPQTgeYRMYpaGGTTQADFARSGDSMATLALGAWA 246 Desulfovibrio vu...
AAM72763    168 ekkdQVNVIAGWMEPSd-MREIKSLASRLGVKIVLFPDTSDVLDAPQTgkHEFYpkGGITINELKSAGDSKCSLAVGCIS 246 Chlorobium tepid...
ZP_00909727 163 vkngKMCVIPGFVNPGd-MREVKRLLKLMGVDFTMLPDTTGVLDAPMTgkYEMYpkGGTKIQDIIELGDCEKTLALGSFA 241 Clostridium beij...
AAR36213    197 rctgKLNLIPGFDANTgnFREYKRILEAFGIPYTILGDISDVFDSPLDgtYRPYp-GGTTLDDAADSINGKATLNLGPYS 275 Geobacter sulfur...
ZP_00558851 181 qineRLYVVPGFDTYPanLREYKRLLNMMNVPYTLLPDYSNVVDTPNLgkYELYp-GGTPLVEMEEALNGLGYLLCQTYS 259 Desulfitobacteri...
BAD95755    188 wtngRLYLVPGFDTYPgnLREYKKLVHAMGIPLTVLPDAEEAMDAPHTgeYNMYp-KGTTMAELADALNASGFIFTQKFS 266 Heliobacterium c...
Feature 1                                                                                       
2AFK_B      297 LEKTKKFVEGtWKHEVPKLNiPMGLDWTDEFLMKVSEISGQPiPASLTKERGRLVDMMTDShtWLHGKRFALWGDPDFVM 376 Azotobacter vine...
1MIO_B      246 SDLGAKTLEKkCKVPFKTLRtPIGVSATDEFIMALSEATGKEvPASIEEERGQLIDLMIDAqqYLQGKKVALLGDPDEII 325 Clostridium past...
AAW39638    248 SGPAALQLDSkCKVPYDLLDlPIGLQATDRFINALCKRFHVDvPESITEERGRLLNLISNLhqYTYGKRVALWGDPDQLV 327 Dehalococcoides ...
CAE10457    293 TPRTMKSFAKkFKQETLELN-PIGLAGTDAFVSAISKLTGKSvPQKLKDERGRLVDAMQDSypYMHGKSFAIWGDPDFLI 371 Wolinella succin...
AAS94438    247 SEAGAKALEKkCGVPYRLLDtPIGVLATDRFLAALQETTGMTvPRSLKDERGKLVDMMTDYqsLLFGKRVAAWGDPDIVI 326 Desulfovibrio vu...
AAM72763    247 AEPAAIALEKkCKVPFETVDmPIGLSATDRFIMALSKAGSVKvPDEITAERGRLVDVMVDMeqYFYGKKVALFGDPDQLI 326 Chlorobium tepid...
ZP_00909727 242 SEAGASTLEKsFKIPYSTLKmPIGIGSTDELIMELSKFSKQQvPYELEEERGQLVDIMIDShpYYDGKKVALYGDPDVLI 321 Clostridium beij...
AAR36213    276 AAKTFSWVKDsYSGKHASLPmPMGVTKTDDFLKKLSELFGKPvPESLKEERGRAVDAMTDAhqYIHNKKFAVYGDPDQLL 355 Geobacter sulfur...
ZP_00558851 260 TSNTKKYLTG-ESIPVEAIPmPIGMAGTDRFIEAAAKLTGKEvSEEITYERGLAVDAMTDAhqYMHGRKFALFGDPDLLL 338 Desulfitobacteri...
BAD95755    267 TSGTYKFVKNvQKINTEMVTmPIGIKNTDNFLMALSEMTGKPiPAELEKERGRAVDSATDAhqYIHGKRFAMFGDPDLLL 346 Heliobacterium c...
Feature 1                                                                                       
2AFK_B      377 GLVKFLLELGCEPVHILCHNGNKRWKKAVDAILaaspyGKNATVYIGKDLWHLRSLVFTDKPDFMIGNSYGKFIQRDTlh 456 Azotobacter vine...
1MIO_B      326 ALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLae-agIEGSKVKVEGDFFDVHQWIKNEGVDLLISNTYGKFIAREEn- 403 Clostridium past...
AAW39638    328 ALSEFLVLLNMKPVYVLTGTPGKRFEERMAAVLgdsvpEAKIAQGPGADMYRLHQWIKQEGVDLLIGNTYGKYIARDEn- 406 Dehalococcoides ...
CAE10457    372 GAVSFLIEMGAEPKHVLCHNAPDGWEEEMKALLat-spAKDLHVWAGKDLWHMRSLLFTEPVDFMIGNTYGKELERDTg- 449 Wolinella succin...
AAS94438    327 PLVEFLVSAGMRPTVVVTGTPGKAFERRIAEVMekagaTWDYEVRAANDLFHLHQRVKAAPVDLLVGNSYGKYIAQAEd- 405 Desulfovibrio vu...
AAM72763    327 PLTEFLLDLGMIPAHIVSGTPGLRFEKRMKEILer-apGANFRNGPQADMFLMHQWIKNEPVDLLIGNTYGKYIARDEd- 404 Chlorobium tepid...
ZP_00909727 322 ALSKFLLELGMIPKYVITGTPSNVFEKQMQALFde-fgVEGCIAKQDADLFELHQLIKNESVDLLMGGTHGKYIARAEd- 399 Clostridium beij...
AAR36213    356 GYVSFLLEMGAKPYHILCSKGTKKLEKEIQALLdtspyGAGCKIYINKDLWHMRSLLMTDPVDAMIGDTHGKFAARDAg- 434 Geobacter sulfur...
ZP_00558851 339 GLVSFLLEMGGEPVHIVCSNSTPLFKKDMERLLasspyGQGATLYPNKDLWHLRSLLVTEPVDMLIGDSHGKWAARDAg- 417 Desulfitobacteri...
BAD95755    347 GLTGFLLEMGGIPVHIVCTNGTEAFRKELQKVLdgspfGKEATVHTGRDLWHLRSLLMTEPVDMLLGDSHGKFDAKDAn- 425 Heliobacterium c...
Feature 1                                                     
2AFK_B      457 kgkefeVPLIRIGFPIFDRHHLHRSTTLGYEGAMQILTTLVNSILE 502 Azotobacter vinelandii
1MIO_B      404 ------IPFVRFGFPIMDRYGHYYNPKVGYKGAIRLVEEITNVILD 443 Clostridium pasteurianum
AAW39638    407 ------TPLVRLGFPILDRVGHQYFPVVGYRGAMRLLEMILNAFLD 446 Dehalococcoides ethenogenes 195
CAE10457    450 ------IPLIRVGFPIFDRHHLHRYSISGYKGTLNLLTWIVNKVLD 489 Wolinella succinogenes
AAS94438    406 ------TPLVRFGFPILDRVGHSHFPKVGYMGGMHLLSQVINTLLE 445 Desulfovibrio vulgaris subsp. vulgaris str. Hilden...
AAM72763    405 ------IPFVRFGFPILDRIGHSYFPNVGYSGSLRLVEKILGVLMD 444 Chlorobium tepidum TLS
ZP_00909727 400 ------IPLVRIGFPVLDRYVHSYMPNVGYRGAMRLLELMLGALMD 439 Clostridium beijerincki NCIMB 8052
AAR36213    435 ------IPLFRFGFPIFDRVNKHRYPIIGYQGVVNMLTEICNKFLD 474 Geobacter sulfurreducens PCA
ZP_00558851 418 ------IPLVRVGFPFYDRVNLHRYPIVGYSGVINLITMIVNTFLE 457 Desulfitobacterium hafniense DCB-2
BAD95755    426 ------IPLVRIGFPIVDRVNMHRSPIVGYEGAINLVTMIANTFME 465 Heliobacterium chlorum

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