Conserved Protein Domain Family
Nitrogenase_VFe_beta_like

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cd01973: Nitrogenase_VFe_beta_like 
Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein which has a practically identical structure in all three systems, it contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction. The V-nitrogenase requires an iron-vanadium cofactor (FeVco), the iron only-nitrogenase an iron only cofactor (FeFeco). These cofactors are analogous to the FeMoco. The V-nitrogenase has P clusters identical to those of MoFe. In addition to N2, nitrogenase also catalyzes the reduction of a variety of other substrates such as acetylene The V-nitrogenase differs from the Mo-nitrogenase in that it produces free hydrazine, as a minor product during dinitrogen reduction and, ethane as a minor product during acetylene reduction.
Statistics
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PSSM-Id: 238933
Aligned: 6 rows
Threshold Bit Score: 889.528
Created: 29-Oct-2004
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAA52045      8 KERAGVINPIFTCQPAGAEYATIGVKDCIPLVHGGQGCSMFVRLIFAQHLKENFDIVSSSLHEASAVFGGmPRIEEGVKT 87  Anabaena variabilis
NP_616157     8 KERTGIINPMYTCQPAGAQYAGIGVKDCIPLVHGGQGCSMFVRLLFAQHFKENFDIASSSLHESAAVFGGaIRVEEAVET 87  Methanosarcina a...
CAE26823      8 KERVGVINPMYDCQPAGAQYAGIGVKDCIPLVHGGQGCTMFVRLLFAQHFKENFDIASTSLHEDSAVFGGhQRIIDGVLT 87  Rhodopseudomonas...
ZP_00416685  19 RDREGIINPMYDCQPAGAQYAGIGIKDCIPLVHGGQGCTMFVRLLFAQHFKENFDVASTSLHEESAVFGGaKRVEEGVLV 98  Azotobacter vine...
YP_426480     8 KERIGTINPIFTCQPAGAQYASIGIKDCIGIVHGGQGCVMFVRLLISQHLKESFEIASSSVHEDGAVFGAlDRVEQAVDV 87  Rhodospirillum r...
ZP_00417192   8 KGRVGTINPIFTCQPAGAQFVSIGIKDCIGIVHGGQGCVMFVRLIFSQHYKESFELASSSLHEDGAVFGAcGRVEEAVDV 87  Azotobacter vine...
CAA52045     88 LVARYPDLRLIPIITTCSTETIGDDVEGTINKVnk-fLKKEYPNREVKLIPVHTPSYRGSQVTGYDAGVTSLITNLAk-- 164 Anabaena variabilis
NP_616157    88 LIARYPHLRIIPIITTCSTETIGDDIEGIIRKVnq-kIKENHPDRDVKLVAIHTPSYSGSMVTGYDNAISAMVKALAk-- 164 Methanosarcina a...
CAE26823     88 LARRYPELRVIPVITTCSTEIIGDDIEGNIGKAna-aLKKEFPGRKIHVVPVHTPSFKASQVGGYAECMQAIIKTICd-- 164 Rhodopseudomonas...
ZP_00416685  99 LARRYPNLRVIPIITTCSTEVIGDDIEGSIRVCnr-aLEAEFPDRKIYLAPVHTPSFKGSHVTGYAECVKSVFKTITdah 177 Azotobacter vine...
YP_426480    88 LLMRYPDVKVIPIITTCSTEVIGDDVDGVVRKLeeglLKEKFPDREVHLIPIHTPSFVGSMVTGYDVAVRDFVKAFAk-- 165 Rhodospirillum r...
ZP_00417192  88 LLSRYPDVKVVPIITTCSTEIIGDDVDGVIKKLneglLKEKFPDREVHLIAMHTPSFVGSMISGYDVAVRDVVRHFAk-- 165 Azotobacter vine...
CAA52045    165 -KGEPNGKLNIITGWVNPGDVTEVKHILSEMGVDANILLDTETFNAPTMPDknsftFGNTTIEDIAGSANAIGTIALCKY 243 Anabaena variabilis
NP_616157   165 -KGEPSEKLNIFTGWVNPGDVSEIKHILSEMQVDGNILLDTETFDSPIMPDksafaYGNTTIEDIADSANALGSIALSRY 243 Methanosarcina a...
CAE26823    165 hKVAPTGKLNVFPGWVNPGDVVLLKHYFNEMGVDATIFMDTEDFDSPMLPDksihtHGRTTVEDIKHASGAIASLALAKY 244 Rhodopseudomonas...
ZP_00416685 178 gKGQPSGKLNVFPGWVNPGDVVLLKRYFKEMDVEANIYMDTEDFDSPMLPNksietHGRTTVEDIADSANALATLSLARY 257 Azotobacter vine...
YP_426480   166 -KGKPSLKINLITGWVNPGDVKELKHLLAEMRVEANVLFEIESFDSPLMPDksavsHGSTTIDDLIDTANAQGTIALNRY 244 Rhodospirillum r...
ZP_00417192 166 -REAPNDKINLLTGWVNPGDVKELKHLLGEMDIEANVLFEIESFDSPILPDgsavsHGNTTIEDLIDTGNARATFALNRY 244 Azotobacter vine...
CAA52045    244 EGGNAAKFLQEQFDVPAIVGPTPIGIKNTDAWLQNIKKLTGKPIPESLVVERGKAIDSLADLAHMYFANKRVAIYGDPDL 323 Anabaena variabilis
NP_616157   244 EGANAATFLKEKFDVPSIVTPTPIGINNTDIFLKNISELTGKPIPESLVIERGKAIDSIVDLAHMFFANKKVAIFGNPDL 323 Methanosarcina a...
CAE26823    245 EGGSTADYLKTEFEVPSHLVSTPYGIANTDAMLKRISEITGKPIPDSLVKERGIALDALQDLAHMFFADKKVALFGHPDL 324 Rhodopseudomonas...
ZP_00416685 258 EGNTTGELLQKTFAVPNALVNTPYGIKNTDDMLRKIAEVTGKEIPESLVRERGIALDALADLAHMFFANKKVAIFGHPDL 337 Azotobacter vine...
YP_426480   245 EGAKAAEFLQKGFDVPAVIGPTPIGIRNTDTFLQNLKIMTGKAIPPSLVRERGIAIDALTDLVHMFLADKKVAIYGNPDL 324 Rhodospirillum r...
ZP_00417192 245 EGTKAAEYLQKKFEIPAIIGPTPIGIRNTDIFLQNLKKATGKPIPQSLAHERGVAIDALADLTHMFLAEKRVAIYGAPDL 324 Azotobacter vine...
CAA52045    324 VIGLAEFCLEVELEPVLLLLGDD-NQAASKDPRLAELakranhaEYDIDVIWNADLWELESRVKEKGd-IDLILGHSKGR 401 Anabaena variabilis
NP_616157   324 VFGLAQFCLECELEPVLLLLGDD-NSSYKKDPRLKELee---ktNCDMQIIWNADLWELESRIKNKTidVDLILGHSKGR 399 Methanosarcina a...
CAE26823    325 VIGLAEFCLEVEMKPVLMLLGDD-NSRYKKDPRILALkn---kcNWDMEVVCNADLWELEKRALDKDygIDLIMGHSKGR 400 Rhodopseudomonas...
ZP_00416685 338 VLGLAQFCMEVELEPVLLLIGDDqGNKYKKDPRIEELkn---taHFDIEIVHNADLWELEKRINAGLq-LDLIMGHSKGR 413 Azotobacter vine...
YP_426480   325 VIGLAEFCLDLEMKPMLLLLGDE-NAGYETDPRIKALqe---rvDHDMEIITNADLWELEDRVKNKGleLDLILGHSKGR 400 Rhodospirillum r...
ZP_00417192 325 VIGLAEFCLDLEMKPVLLLLGDD-NSKYVDDPRIKALqe---nvDYGMEIVTNADFWELENRIKNEGleLDLILGHSKGR 400 Azotobacter vine...
CAA52045    402 YIAIDNKIPMVRVGFPTFDRAGLWKNPVIGYRGAEWLGDAIANAMFADMEYKHDREWILNVW 463 Anabaena variabilis
NP_616157   400 YIAIDNDIPMVRVGFPTFDRAGLWKYPVIGYKGAEWLAENIANTIFASMENKHDREWIINVW 461 Methanosarcina acetivorans C2A
CAE26823    401 YVAIDANIPMVRVGFPTFDRAGLYRHPTMGYRGAMLLGETIANTLFAHMEYNKDREWLLNTW 462 Rhodopseudomonas palustris CGA009
ZP_00416685 414 YVAIEANIPMVRVGFPTFDRAGLYRKPSIGYQGAMELGEMIANAMFAHMEYTRNKEWILNTW 475 Azotobacter vinelandii AvOP
YP_426480   401 FTAIDNNIPMVRVGFPTYDRAGLYRHPVVGYAGATWLAEAMANTLFTDMEYKKNKEWILNVW 462 Rhodospirillum rubrum ATCC 11170
ZP_00417192 401 FISIDYNIPMLRVGFPTYDRAGLFRYPTVGYGGAIWLAEQMANTLFADMEHKKNKEWVLNVW 462 Azotobacter vinelandii AvOP
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