1QH8,1MIO,2AFK


Conserved Protein Domain Family
Nitrogenase_MoFe_alpha_like

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cd01967: Nitrogenase_MoFe_alpha_like 
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Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one P-cluster (located at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein is a homodimer which contains, a single [4Fe-4S] cluster from which electrons are transferred to the P-cluster of the MoFe and in turn, to FeMoCo the site of substrate reduction. The V-nitrogenase requires an iron-vanadium cofactor (FeVco), the iron only-nitrogenase an iron only cofactor (FeFeco). These cofactors are analogous to the FeMoco. The V-nitrogenase has P clusters identical to those of MoFe. In addition to N2, nitrogenase also catalyzes the reduction of a variety of other substrates such as acetylene The V-nitrogenase differs from the Mo- nitrogenase in that it produces free hydrazine, as a minor product during dinitrogen reduction and, ethane as a minor product during acetylene reduction.
Statistics
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PSSM-Id: 238929
Aligned: 53 rows
Threshold Bit Score: 338.04
Created: 29-Oct-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1QH8_C       53 PGVMTVRGCAYAGSKGVVFGPIKDMAHISHGPVGCGQYSR---------AGRRNYYtgvsgvdsfgtlnFTSDFQERDIV 123 Klebsiella pneum...
AAZ71607    322 HLSRPLLCGCAFSGAVTATFQVNDAATVLHGPRSCTYITAdaltrsfllGDGRNITdkekq----vpglLPTDMKEEDII 397 Methanosarcina b...
ZP_00869836 311 IPQKPSLFGCAFAGAIAVLSQIQDASIIAHCPSSCAHIVSnll---vssQNRDRDKsadygk-qtsfsfIHTGMDEKMMV 386 Methanospirillum...
NP_947693    56 ESPFSQGSTCSEQIAESQASNVRDAVLVQHSPIGCAAGHIns------nAFFRNGLmrrgla-prnvtgLSSNLIERDMI 128 Rhodopseudomonas...
AAC44383     30 TLQGSHTRPCKFGAATKILSGIKDAIVISHGPSGCAYGVKra------yKLTNSRNsgsp-----yepvVTTNMSEKAVI 98  Anabaena variabi...
NP_616158    43 KLQGSHTRPCKFWTAMKILSGIKNAVVIAHGPSGCAFGVKqt------yKLTNCRNsgsp-----yeavITTNIDEKAVV 111 Methanosarcina a...
NP_616561    33 KLQASHAPMCKFFTSYYVISGIRHVVPLVHGPTGCPLYMSdf------vRTRECCEirgip----leptACTALNESHVI 102 Methanosarcina a...
NP_947708    55 STPFAQASMCAEHIAVTNATIIQDSVVVQHSPIGCAASQSft------aRYYRDLAarrgwk-ledpksICTNLGEQDMV 127 Rhodopseudomonas...
ZP_00909155  55 EGPFAQGSGCSEEMVECQAGQVRDAVLIQHSPIGCGAGQVgn------nRLFRFGLatrnlp-ienvkiMSTNLLEGDMV 127 Clostridium beij...
ZP_00911913  44 PRKFSQCMGCNAGHAFCQLSMIRDAVVVNHAPIGCAGDFFgf------nFTYRVEQmkrelp-atigryFSTCIEEKDTV 116 Clostridium beij...
1QH8_C      124 FGG-DKKLSKLIEEMELLFPltkgITIQSECPVGLIGDDISAVANASSKAld-kPVIPVRCEGFRGv----SQSLGHHIA 197 Klebsiella pneum...
AAZ71607    398 FGGlEKLENRIEKALLAGWQt---VFVVSTCPGGIIGDDIKEAVSRAKVRfpgaRVIPIPVEGVITg----DFSAGMLEG 470 Methanosarcina b...
ZP_00869836 387 FGGiEGLKKTIIKSVESGNRv---IFIVSGCTPGITGDDIVGCASEMSQNlg-iPIIPVSVNGIGEgdfsaGIMAGYHAS 462 Methanospirillum...
NP_947693   129 YGG-AEKLRATIKAAVERHQpk-aVFVATSCATGIIGDDVESVVRDCEDElg-vPVVAMYCEGFKSk----HWSSGFDAI 201 Rhodopseudomonas...
AAC44383     99 FGG-EKELRGAILEVDQKYHpd-aIVVATSCASGIIGDCVDEVVGKARSEid-aEIMTIHCEGFAG-----EYRSGFDIV 170 Anabaena variabi...
NP_616158   112 YGG-ERELKGAIQEVDSKYKpd-iIFVATSCATGIIGDYVDAVVSRVRPEin-aKIMAVHCEGFAG-----EYRSGFDLV 183 Methanosarcina a...
NP_616561   103 YGG-EGKLLEAVKEAYAKYHpd-lIVILSCCCSGIIGDDVESIAREAEKLig-cRVLALRSEGFGG-----DFRSGYEDA 174 Methanosarcina a...
NP_947708   128 FGG-VARLEDTIRDAYERHKpr-vIFVATSCATGIIGDDVDGAAKRVEDEig-iPVVTLHCEGFKSk----HWSSGWDVI 200 Rhodopseudomonas...
ZP_00909155 128 FGA-TKKLKQTVEDAYKRYKpk-tIFIVSSCATGIIGEDIESVSSEYEKKlk-iPIVPLICEGFKSk----HWTTGFDAT 200 Clostridium beij...
ZP_00911913 117 FGA-AKKLEDTVREAYKRTKpn-aIFVTTSCASGIIGEDVDAITENLSKElg-iPVISCSCEGFRSk----IWTTGFDAA 189 Clostridium beij...
1QH8_C      198 NDVVRDwilnnregqpfettpyDVAIIGDYNigg------dawASRILLEEMGLRVVAqwsgdgTLVEMENTPFVKLNLV 271 Klebsiella pneum...
AAZ71607    471 RKRVADlidpsv-----rpekgLVNIIGERNfssqe--eknfcIVEKLLQRLGYRVNCrflketDTLSLRSFKKAELNLL 543 Methanosarcina b...
ZP_00869836 463 LQLVKQeagk---------nerSVILVGEKIlannt--tanfnELSQYLSTLDIQVSCrflaytSVNEVQSMSEQSLILP 531 Methanospirillum...
NP_947693   202 QHGVLRhvvkpkp---gprqdnLVNIIVLWGs----------dVFTPMLAELGLEANNilt-vaSVDEIARASEAAASAT 267 Rhodopseudomonas...
AAC44383    171 FRQIVDfmepptpe-rqaqladSVNIVGAKMgpertevegdvkELKRLIKGMGARVHSviagdcTLEELKQAPSAAVNCT 249 Anabaena variabi...
NP_616158   184 FRQIVQlmdkpdse-srvalasSVNIVGGKMgperteidtdvkELRRLIEDMGASVNAiiagncSLEEIQRAPSVAVNCT 262 Methanosarcina a...
NP_616561   175 FKLIMElmeppk-----tkmkgTINILGARWgptptefnwdmdEIERLLGEVGIKINAiiaggcTVEQLRHAREVELNAS 249 Methanosarcina a...
NP_947708   201 EHGILRrlvpep----prkqpdLINVIHLGGp----------dVFSPLLNPLGLRVNLvmg-gnTLERLAQMSEAAATVT 265 Rhodopseudomonas...
ZP_00909155 201 QHGILRqivnkh----pkkqedLINIITLWGs----------dVYTPMFRELGLRVNFvid-laSVEDLERLSEAAGTVS 265 Clostridium beij...
ZP_00911913 190 YHSILRklvkpp-----rkktnKINVANFWGs----------hIFDEFLNRLGYEAQYivp-fsTVAELEYISEAAATIH 253 Clostridium beij...
1QH8_C      272 HCYRSMNYIARHMEEk--HQIPWMEYNFFGPTKIAESLRKIADQFddtiraNAEAVIARYEGQMAAIIAKYRPRLEGRKV 349 Klebsiella pneum...
AAZ71607    544 ACTDPDTRAIQEYLSerfRLEFFELPFPVGFRESSIWVKALAARLlp--gkDVSSLLQEQEKVYKAGIEKYVPNLSGKRV 621 Methanosarcina b...
ZP_00869836 532 VSSDKITLEISKIISektGSEIFNHAFPYTFNETVRWIQDLADRFri--qdKGSALIARNEKIYRKEIALIMLMTAGKRV 609 Methanospirillum...
NP_947693   268 FCYSVGGYLGAALEEq-yGVQEIKAPQPYGFDGTDAWLRALAKATgr--eeRAEAYIAREHARVRPQIERLRERLKGVRG 344 Rhodopseudomonas...
AAC44383    250 LCLDLGYTIGKAMSDr-fGTPLNSTILPYGISATEKWLRGAAKYLkm--eaQAEALMEREYAAIKTEFEAAKKYIEGKLA 326 Anabaena variabi...
NP_616158   263 LCLDLGYAIGREMLDq-fDTPLNSTILPYGISATERWLREAAKHLhm--eaEAEALIKREYEAIRVEFEEAKKHLAGKLA 339 Methanosarcina a...
NP_616561   250 WCFDWGQKLGDLMQEr-fGIPYSRTGQPYGPEATKEWILGVAKPLgm--eaEALKVIEREMEEVEPEIESLRQALSGKTA 326 Methanosarcina a...
NP_947708   266 MCFVLSYLATGLEQQf--GVPEVRAPLPYGLDATDNWLRDIARLTgt--sdKVEAVIASERARVAPGLARLRKALTGKRG 341 Rhodopseudomonas...
ZP_00909155 266 FCYTLSSYLSAGLEQy-fGVPEIKAPQPYGFKGTDAWLREIGRVThr--eeLVEKYIEKEHKRVEPIIKELRKKLKGVKG 342 Clostridium beij...
ZP_00911913 254 ICPSLSTYLGAALEQe-yGVKEIKAPPAYGIEGTDIWMREIGRVLgk--eeEIEEIIKEEHERVLPKLEEYREKLKGKIA 330 Clostridium beij...
1QH8_C      350 LLYMGGLRPRHViGAYEDLG---MEiIAAGYEFahnDDYDRTLPdlkeGTLLFDDASSYELEAFVKALk----------- 415 Klebsiella pneum...
AAZ71607    622 LLVSYTEDISWVlDTIRDLG---MEiLKVGFSVs-tFRKELPDLlsdeGFPVERNYTDEMRAKDVRDLr----------- 686 Methanosarcina b...
ZP_00869836 610 IIASSGPDISWVlEAVRECG---MEiIRAGYFSs-pYTTKNNQKe--sEPSIVMDYTPDALYDDIKTYr----------- 672 Methanospirillum...
NP_947693   345 YVAMGAAYAHGViGVLRELG---VE-VPGSLVFhhdPVYDSHDVrqdtLGHMIDAYGDVEHFSISNRQpyqfyn------ 414 Rhodopseudomonas...
AAC44383    327 IIEGHDAIKCLSiAHMLERDf--GM-RAVIYNFhpwSTEARETSvdylLETGLDPEILITKGTLAFGKyesm-------- 395 Anabaena variabi...
NP_616158   340 IVEGHDAIKALSiAHMLERDf--DM-RVVIYNFhpwSTEARETSidylLETGLDPEILITKGTLAFGKyeam-------- 408 Methanosarcina a...
NP_616561   327 IIEISEFPGPIRaLSLARMVaefGS-HPVVINVhpyTIKERMPSikflLEEGVNPEIILTKGLFRLGSfrssketedele 405 Methanosarcina a...
NP_947708   342 FVAAGAAFAHGLlADLRELG---VT-VDDAFSFhhdPTTDSGDPqqdsLGHLVDAWGDIPNYTVSPDQhfqaha------ 411 Rhodopseudomonas...
ZP_00909155 343 FTSTGSGYSHGLiTVLRELG---IS-VDGSLVFhhdPVYDSGNVeadsLKHLVDNYGDVKNFSVSNRQqyqfys------ 412 Clostridium beij...
ZP_00911913 331 YVTAGAAHGHAIiAMLRELG---LI-VQGAAIFhhdPLYDNKDKtsdaLAQTVNIYGDIKHYNVCNKQayelvn------ 400 Clostridium beij...
1QH8_C      416 ------PDLIGSGIKEKYIFqkm---------gvPFRQMHSWdy-sGPYHGYDGFAIFARDMDMTLNN 467 Klebsiella pneumoniae
AAZ71607    687 ------PDLVLSSYVPSVPEg------------gVHYDTIPV----SPQVGFLSGLELAKRWSTLLRL 732 Methanosarcina barkeri str. ...
ZP_00869836 673 ------PDLVLTTIWLDYKKadvr------ygmiPFCPNVGFf---GALSSMKHWASILSGPVREGWR 725 Methanospirillum hungatei JF-1
NP_947693   415 llkrsdPDFIIIRHGGLAGLasr--------lgvPAIALGDA----STAIGYQGMIDLGEEIVDALAQ 470 Rhodopseudomonas palustris C...
AAC44383    396 ---kqtEDELLEFIGGLDADsvvyfgsslsfphiPVVDLNAIl--nRPRFGYRGALKVAKCIKTALEY 458 Anabaena variabilis ATCC 29413
NP_616158   409 ---lqtENELLEYLGDMSPErtvyfgssmsfpniPVVDLNAIl--nRPRFGYRGALKVAKCICTALEY 471 Methanosarcina acetivorans C2A
NP_616561   406 tivkkyDNAIFFGNSGRFPPc-------------PVVNLTLMnpafQPQYGFRGIKNISALVRQALEN 460 Methanosarcina acetivorans C2A
NP_947708   412 allrakPDFVICRHTGTLAVlagr-------mgiPVLPIFYS----NDGLGYEGLLTIGRAILRVLPR 468 Rhodopseudomonas palustris C...
ZP_00909155 413 llkrvnPDFILIKHGGLSPLask--------lgiSAAPLSDE----SLTIGYQGMIYLGNKILDILAK 468 Clostridium beijerincki NCIM...
ZP_00911913 401 ilnrvkPDLMIARHGGMTMWgak--------lgiPTLLIGDE----QFGFGYQGVLNYASRIVETLDN 456 Clostridium beijerincki NCIM...
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