2AFK,1G20,1MIO,1QH8


Conserved Protein Domain Family
Nitrogenase_MoFe_beta_like

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cd01965: Nitrogenase_MoFe_beta_like 
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Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains, a single [4Fe-4S] cluster from which electrons are transferred to the P-cluster of the MoFe and in turn, to FeMoCo, the site of substrate reduction. The V-nitrogenase requires an iron-vanadium cofactor (FeVco), the iron only-nitrogenase an iron only cofactor (FeFeco). These cofactors are analogous to the FeMoco. The V-nitrogenase has P clusters identical to those of MoFe. In addition to N2, nitrogenase also catalyzes the reduction of a variety of other substrates such as acetylene The V-nitrogenase differs from the Mo-nitrogenase in that it produces free hydrazine, as a minor product during N2-reduction and, ethane as a minor product during acetylene reduction
Statistics
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PSSM-Id: 238927
Aligned: 65 rows
Threshold Bit Score: 312.191
Created: 29-Oct-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2AFK_B       62 TVNPAKACQPLg-AVLCALGFEKTMPYVHGSQGCVAYFr--sYFNRHFRepv-----scVSDSMTEDAAVFGGqQNMKDG 133  Azotobacter vin...
NP_947692    25 PIEQVRYACALg-AMQTVAAIPRAIPITHCGPGCADKQcgalAFNNAYQgggwgglgvaPSTNATQREVIFGGeNRLREL 103  Rhodopseudomona...
AAS91670     11 TVNPCKMCMPMg-VSNALYGIKNCMTILHGSQGCSTYIr--rHMATHYNepv-----diASSSLTEEGTVYGGeNNLIKG 82   Clostridium bei...
AAT37646     10 NVNPCKMCMPMg-GVMAFKGIEGNMVILHGSQGCSTYIr--rHMATHYNepi-----diASSSLTENGTVYGGtKNLKLG 81   Clostridium pas...
EAM95121      4 FIERPRTSCALggALATMSALPRVVPIIHSALGCGGNLsgaaAFGAGYCgssyasgqsaPTSAVTETEIVFGGsDRLHEE 83   Desulfitobacter...
ZP_00801687  10 NINPCKCCMPMg-ASTAFKGIESTMVLLHGSQGCSTYIr--rHMAGHYNepi-----diASSSLNEKETVHGGaANLKKG 81   Alkaliphilus me...
ZP_00810379   4 PLSRSRAGCALhgALYAVSAIDGVTALVHSTPGCAVQAg---LWNGHAGcggs---gawSTTNLSEKHIVFGGtSRLREQ 77   Rhodopseudomona...
ZP_00909156  13 SIEQVRYGCAIg-ALASVSAIPYAMPITHCGPGCTSKQsg-vLMSNGAQgggysagpviPSVNATEKEVVFGGeKKLREL 90   Clostridium bei...
ZP_00911901  14 SINQVRYGCAIg-AIYSVSSIPGAMPIVNCGPGCADKQytglAFYNGFQgggysggavsPSSNAGENEVVFGGeNRLREL 92   Clostridium bei...
ZP_00911912   4 IIEQPRFSCALg-AQQTVIAIKRGVPILHSGPGCSNKIssliGQGEGYAggn-----tiPCTNATEADVVFGGeRKLKNV 77   Clostridium bei...
2AFK_B      134 LQNCKATYKPdMIAVSTTCMAEVIGDDLNAFInnskkeg---fipdefPVPFAHTPSFvGSHVTGWDNMFEGIARYFtlk 210  Azotobacter vin...
NP_947692   104 VTHTLELMEAdLFVVLTGCIPDLIGDDVPAVVkefq--------akgaPVVYAGTGGFrGNNYTGHEVVTRAIIDQFast 175  Rhodopseudomona...
AAS91670     83 LENLIKLYNPeVIGIATTCLAETIGEDVVRLSkifyek----hpdskvKLIPIQSPGYgGTQYGGYFTALRAVVENVemy 158  Clostridium bei...
AAT37646     82 LKNMIEMYNPkTIGIMTTCLAETIGEDIQRILhefreeekgnevyeniKIMTTSTPGYgGTQAEGYFRALRSIVEQIckk 161  Clostridium pas...
EAM95121     84 IQSTLDLIDAdLFVVATGCMTEMIGDDVQGVVsefa--------ggrkPVIAISTPSFkGDAYAGYSITLEGIFNKYlpr 155  Desulfitobacter...
ZP_00801687  82 LKNILRLYNPkMIGISTTCLAETIGEDIQRLIiefkeee---pqykevSFVPVSTPGYgGTNYEGYYFTIREIVKNIakd 158  Alkaliphilus me...
ZP_00810379  78 IKNTRSILPGeLTVVVTGCPAEMIGDDVAAMAqear--------dvgdDIVDLATAGFhGSAYHGYEIFLKGVIEKSlqa 149  Rhodopseudomona...
ZP_00909156  91 IKGTLLIVKAdLYVVLNGCIGELVGDDIGAVVkefq--------elgfPIVHADTGGFkGNNLIGHEIVIKAIIDQFvgd 162  Clostridium bei...
ZP_00911901  93 IKSSLKIMDAeLFVVLTGCIGEIVGDDVGAVVgefq--------kkgaPVVYAETGGFkGNNFIGHELVTKAIIDQYvge 164  Clostridium bei...
ZP_00911912  78 IDGAFQVIDAdLYVVLTGCTSDIVGDDVGSVTskyq--------egdkPIVYVETGGFkSNNYVSHSEVVNAIIDQYvdk 149  Clostridium bei...
2AFK_B      211 smddkvvgsnkKINIVPGFETYLg----nFRVIKRMLSEMGVGYSLLSDpeevldtpa-dgqfrmyaGGTtqEEMKDAPN 285  Azotobacter vin...
NP_947692   176 dag---prehgLVNLWAPLPYQDpfwrgdLAELKRLLQGIGLRVNVLFGp-----------------GSAgvSEWRAIPR 235  Rhodopseudomona...
AAS91670    159 t-------dknEKVNVIAGPMSSa----dMREIKEILEDFKIDYILLPDlsenldgvhskkynrlpsNGTsiEEIKFMGG 227  Clostridium bei...
AAT37646    162 pe----ndvklNKINIICANLNPg----dVRNIKEILETFGVEYTILPDvsntldsshndqytrlpaGGTkiEDIEKMGS 233  Clostridium pas...
EAM95121    156 sn----skkpkLVNLFGLVPSYDpffrgdLSEIKRLLEKLGLEANTFFTp-----------------DQTf-ANLTSAPS 213  Desulfitobacter...
ZP_00801687 159 t-------tpiDSINLIAGSLTPa----dVRKVKEMMDLFAIKYTIVPDisktldapftteykklssEGTklSEIEKMAG 227  Alkaliphilus me...
ZP_00810379 150 gp-----rqagLVNILGPVPRQDgfwlaeIEELSRLIRGIGLKPNPIFGp-----------------QGGv-ASLRALGQ 206  Rhodopseudomona...
ZP_00909156 163 yig---ekedkLINLWSEVPYQNtfwrgdLEEIKRILEGSGFKVNVFFGv-----------------ESNgvEEWKSIPK 222  Clostridium bei...
ZP_00911901 165 ydg---ekekgLVNVWSLLPYQNtfwrgdLTEIKRVLEGAGLKANILFGp-----------------ESKgvSEWRDIPK 224  Clostridium bei...
ZP_00911912 150 fkns-ngvkkgLVNVFTTVPYQDpywngnLEEIKRVLEGIGLEVNILFGn-----------------ESNgiEEWKTIPN 211  Clostridium bei...
2AFK_B      286 ALNTVLLqp--whLEKTKKFVEGtWKHEVPKLNi-PMGLDWTDEFLMKVSEISGQPi-------PASLTKERGRLVDMMT 355  Azotobacter vin...
NP_947692   236 AQFNLVLsp--wlGLATAQHLENkFGQPYLHLPvpPIGGRQTSEFLRQVAAFAGIPdaqa-gafIAAEERDYYGYIEAFS 312  Rhodopseudomona...
AAS91670    228 AKATIELttfikeEYSVGSYLEEnFGVKNFRINv-PRGLRDTDNFLKVLAKISGNPi-------PEKYKKQRGRYLDAMI 299  Clostridium bei...
AAT37646    234 ALATIEMgmtvpyDYSPGTYLKEeFGVPLYKCNi-PMGLRSTDEFMSIISKITGKSm-------PDKIKLQRGRYLDAMI 305  Clostridium pas...
EAM95121    214 ATLNILFsh--vwGVEFVKNFEQtHGTPYWITDl-PIGPEATDHFLREVAEKLEIEpqrv-eevIAQENKEYYGYFQRAV 289  Desulfitobacter...
ZP_00801687 228 ASATIEMgmlvadHLSPGKYLEDqFGIPLYRCPl-PIGLENTDKFVSILRKISGKEm-------PQSLMEDRGRMLDGMI 299  Alkaliphilus me...
ZP_00810379 207 AELSLSVsp---wGHAAAQALFErLGVPRIESSglPVGADATAELLERMVAAAGEVddaaalafINAERRRENHALDQVL 283  Rhodopseudomona...
ZP_00909156 223 AQFNLVLsp--wvGLEIAEYLEKkYEQPFLHIPtvPIGAKETTDFLRKVAKFSGKNkrkv-edfIKREEKRYYHYLDSFS 299  Clostridium bei...
ZP_00911901 225 AQFNLVLsp--wlGLDTAKHLENkYEQPFLHIPtvPIGAKETSAFLRKVVDFSGIDkqks-edfIKDEEKNYYYYLEHFS 301  Clostridium bei...
ZP_00911912 212 AEFNIVAss--wvGLNIAEHLKNkYKTPYVHFPylPIGAIATSKFLRQIGEFGHLDknkv-enfIKKEEEKFYFHIEKTA 288  Clostridium bei...
2AFK_B      356 Dsh---tWLHGKRFALWGDPDFVMGLVKFLLELGCEPVHILCHNgnkrwkkavd---ailaaspygkNATVYIGKDLWHL 429  Azotobacter vin...
NP_947692   313 EfysqyrWGLPARFAAIGDAATTLSISSFAVRQLGLVPAVVVITdntppehrdai-raafakldhdvGIEPVFAEDSYAV 391  Rhodopseudomona...
AAS91670    300 Dsh---kYNAEARIAIFGEPDFVYSTARLAVENGAVPVLIASGDvckklepslreevnelsnqlfagECKIIDEADFKEI 376  Clostridium bei...
AAT37646    306 Dsh---kYNAEARAVIYGEPELVLAITKTCAENGVLVKLIATGSknkelkakl-----ekelarqveKPVILDDTDFETI 377  Clostridium pas...
EAM95121    290 Dif--tdADYKFYAAIITNSNYAIPYAEFLEKELGWVPKDIFITdllhdgqker---lreafqaknlLGELIFERDTSRI 364  Desulfitobacter...
ZP_00801687 300 Dsh---kYNAEGRAAIFGEPDTVYAASKLCLENGIRPLVIATGTragklkell-----eedlkkvdeNCMVIDDTDLQTI 371  Alkaliphilus me...
ZP_00810379 284 Etl--yrQGSSRSFAVAAPSLHAGGIARFLIGTLGWSSAAIVITddppaga---------rsvieagLHGVHYSEDFDEI 352  Rhodopseudomona...
ZP_00909156 300 EfyaeygWSVTSMYAVISDSTYGLALNRFLADQLGFVPAIQVITdnppekyrkqi-snqfenlsegvSTEVEYAEDGYTI 378  Clostridium bei...
ZP_00911901 302 DfyaeywWGLPAKYAVVGDSAYNLALNKFLVNQLGLIPAKQIITenppeqyrrai-ageysklaedvSADVDFAEDGYVI 380  Clostridium bei...
ZP_00911912 289 DfmlefrYGLPRKFYSILDASYSLGFSKFLLNELGILPGKQFIIddtpeqykesi-ikefesiseyrSAEVEFNVDAGAV 367  Clostridium bei...
2AFK_B      430 RsLVFtd-------------kPDFMIGNSYGKFIQRDtlhkgkefeVPLIRIGFPIFDRhhlhrstTLGYEGAMQILTTL 496  Azotobacter vin...
NP_947692   392 HaAIRgadf---------grkPPLIFGTTWERDLAKEl-------rGFILEVGFPASYEvvl-srgYAGYRGALTLIERI 454  Rhodopseudomona...
AAS91670    377 EkLALdl-------------kVNVMIGSSDGRRIEEKh-------kIPLIRLSFPIHDRiggqrilSIGYEGSLNLGDQI 436  Clostridium bei...
AAT37646    378 EsYAKdf-------------nINVMIGNSDGRRMAGRl-------gVKIVRIGFPVHDRigaqrliFTGYNGSAFFIDSI 437  Clostridium pas...
EAM95121    365 GvTLRqrhpqdqgqryfdayaPLYLLGSSLEKELAVGr-------gLHYLSVSFPVYNRiiv-drgYSGYRGGLHLFEDL 436  Desulfitobacter...
ZP_00801687 372 QkYVRel-------------nINVLIGSSEGKFITEKd-------gVPLVRIGFPIHDRvgaqrktYSGYEGSMRFLDEI 431  Alkaliphilus me...
ZP_00810379 353 NdRLVss-------------gAEIVFGSSLERAAASEl-------kAPLIECASPSRRPglt--tgFGGIRGALTLLEEI 410  Rhodopseudomona...
ZP_00909156 379 DeIIRntdf---------kgrAPIIFGTSWDRDLSKEl-------kGYIMEIALPVSNEivi-drcYVGYRGALTFLERL 441  Clostridium bei...
ZP_00911901 381 GqLLRqtdf---------ghkPPIIFGTTWERDTAKEl-------nGAIIEVGFPASYEvvl-srtYIGYKGALNLLEKI 443  Clostridium bei...
ZP_00911912 368 QlEIEkekek------dfqegRALILGSGWDRDLAAKl-------nADLLITSVPVTYRlvl-ncgYAGYNGGLRAIEDI 433  Clostridium bei...
2AFK_B      497 VNSIL 501  Azotobacter vinelandii
NP_947692   455 YTTAI 459  Rhodopseudomonas palustris CGA009
AAS91670    437 TNVML 441  Clostridium beijerinckii
AAT37646    438 ANTIL 442  Clostridium pasteurianum
EAM95121    437 IDVLV 441  Desulfitobacterium hafniense DCB-2
ZP_00801687 432 TNTLL 436  Alkaliphilus metalliredigenes QYMF
ZP_00810379 411 VAASA 415  Rhodopseudomonas palustris BisA53
ZP_00909156 442 YTIVT 446  Clostridium beijerincki NCIMB 8052
ZP_00911901 444 YTTAI 448  Clostridium beijerincki NCIMB 8052
ZP_00911912 434 YDRVL 438  Clostridium beijerincki NCIMB 8052
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