1VK4


Conserved Protein Domain Family
ribokinase_group_D

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cd01937: ribokinase_group_D 
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Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Statistics
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PSSM-Id: 238912
Aligned: 9 rows
Threshold Bit Score: 230.366
Created: 7-Sep-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
ATP bindingsubstrate
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of the family
  • Citation:PMID 9519409

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1VK4_A       13 XITFIGhVSKDVNVvdgkREIAYGGG-----VVXGAITSSLLGv-kTKVITKctredvsk--fsflrdngVEVVFLKSp- 83  Thermotoga maritima
CAB49506      2 KFAIIGnLTIDIVN----GKKKPGGG-----AYYSGLILSKHTg--VTIYTKigddypkk--wleeissyAEVVAFKGs- 67  Pyrococcus abyssi
NP_341706    10 KILIVGgFTIDEIQ----GKIRPGGP-----LIYSSLGVMRGGg-iPKLYGLigrd----------fdfeIDFISDLEkq 69  Sulfolobus solfa...
NP_560651     2 EITIAGnPTIDIIItntgAVKRYGGS-----IYYASLVLSALGa-kVKVVGVaspdvisditkalrdigvEPVIEPADv- 74  Pyrobaculum aero...
NP_618158     9 NIVIAGsATVDKIVqkgtITVKIGGV-----VTYAGITFKKKNl-tPIIISNvshtnkdi---idfflnqKIRFINGHt- 78  Methanosarcina a...
ZP_00019243  23 MIVAFGnPVYDEIIt---PVVSTGGRvlsgcSTNACLALSRLGr-tTALVGRvgpdyadrf-qsdllrygITPFVSLSa- 96  Chloroflexus aur...
ZP_00019726  40 EFVAIGhVTRDLLPq---QTTAPGGT-----ARFAALLAQRLGl-rAAIVTAsvep----------appgVAWISLPTt- 99  Chloroflexus aur...
AAO78682      5 QLCCIGhITLDKVVtpqsTVYMPGGT-----AFYCSHAIRHFNdidYALVTAvgatemkv--vdqlrgigISVTALPSq- 76  Bacteroides thet...
AAR24468      2 KLDILShCAIDTIQindsKYVVTGGP-----ACYCSLTARILKf-dVVLHTKfgsdfp------lvnyltEQKIVFEDsl 69  uncultured crena...
Feature 1                                                                                       
1VK4_A       84 -----rTTSIENRYgsdpdtRESFLISAAdpftes-dlafieGEAVHINPlwygefpEDLIPVLRRkv----xFLSADAQ 153 Thermotoga maritima
CAB49506     68 -----sTTMYELFYsgegrvIKALSPGDKisade---lstisEEKVIINPv-----aGEIGEGDVLif----kKPCLDLQ 130 Pyrococcus abyssi
NP_341706    70 liydeyTIRFKIDLtnegrkLILLKKPKNrikvi----sdntVDGILVNPv-----cKEVDNMSIQsp----iPIAVDIQ 136 Sulfolobus solfa...
NP_560651    75 ------TTTFELDYrtrprsVRLVAKPSRgie-------avtGDIVILAPv-----yDELSGAKVVg-----nKIVADLQ 131 Pyrobaculum aero...
NP_618158    79 -----eRTTEFINYideenrKQEMPCCAIpidlgtklkeidrVEHIHLGPlh----pEDIHPSFFKete-kkfFVSLDVQ 148 Methanosarcina a...
ZP_00019243  97 -----qTGGFKLVYdtr-gdRTLDVLGVAepiqtv-pdivtsASAVIVGPilq-etpLDLIRSIRDrt---daPIFLDPQ 165 Chloroflexus aur...
ZP_00019726 100 -----fSSTFENRYtpagrqQWLHAIAPSipvtal-paawrtAPIVLLGPv-----lHECSPDLAGafp--gaLIGATAQ 166 Chloroflexus aur...
AAO78682     77 -----hSVYFENIYgenpddRTQRVLAKAdpftas-qlqeieAEIYHLGSlladdfsLEVIKELSRk-----gLIAVDSQ 145 Bacteroides thet...
AAR24468     70 s--ikpTTQFVLNLvnsertLFLQNKCEPisdi------tlnTDNVIISPi-----fDEISIKLFEkiknnasFVMLDPQ 136 uncultured crena...
Feature 1                                       #                                               
1VK4_A      154 GFVRvpeneklvyrd-wexkekylkylDLFKVDSREaetlt----gtndLRESCRIIRSfg------------------a 210 Thermotoga maritima
CAB49506    131 GFVRelrkdgl----------vtlkeiDGEFLENASiv---------hsSTEEFRMVKNlkl-----------------p 174 Pyrococcus abyssi
NP_341706   137 GFVRncieyeeirye-mgfrfpfnsnyMVMHGNREEle---------ssKLELSDLFKVgf------------------- 187 Sulfolobus solfa...
NP_560651   132 GYLRaksp---------------lpdaDLVHFSYDDmq---------vtLEEIARFGKRw-------------------- 167 Pyrobaculum aero...
NP_618158   149 GYVRkaeqnkik-------ycvsenlhDVLNMSDVIkae-------ikeFGEILKTYKMtpeeli----------khynl 204 Methanosarcina a...
ZP_00019243 166 GLLRrfgvdgriehflpddfaaiaplcHVIKANEVEtkvitg-idprvdPAAAARRLREtg------------------c 226 Chloroflexus aur...
ZP_00019726 167 GWLRdwnt----------------dlpTPIRPRRWRp-----------tPAELRHLHVLtlssedvagddelaayyarlv 219 Chloroflexus aur...
AAO78682    146 GYLRevrdthvypvd-wtdkrealqyiHFLKVNEHEmevlt----glsdPHEAARKLHEwg------------------v 202 Bacteroides thet...
AAR24468    137 GFLRrrnsen-----------riflehTDLNLSNVSaikvnadelkcltGTSNVDGIKIlqkk---------------gi 190 uncultured crena...
Feature 1            #                             #  ##  #                       #  #     
1VK4_A      211 kIILATHa-sGVIVFd-gNFYEASfrsw---sleGRTGRGDTCTAAFLVGFVFkkx-sieKATKFAAAVTSVKXR 279 Thermotoga maritima
CAB49506    175 dVLAVTNgseEGVVIt-rKGKITFkprk--vdvkDPTGAGDAFLALLSYGINRyne--lkRALEFALDETAKFLK 244 Pyrococcus abyssi
NP_341706   188 kEIIVSDghnGFNVYtnmLAKYTYrpsk---igkNEIGTGDFLLGAYFALRLGgle--iiEAATIAGKLTEEFSN 257 Sulfolobus solfataric...
NP_560651   168 pTVVYTLgeeGAYIFh-aGAMYYInsar--lnivDVTGSGDVFLAALTYFHYVksldiidAACEASKIVAGFLAT 239 Pyrobaculum aerophilu...
NP_618158   205 kEIVVTTgkkGGYIVs-dSGKRTEyrahrvkkvvDTTGAGDVFFASYIASRYYrkr-dakESSNYAAYISAKHIE 277 Methanosarcina acetiv...
ZP_00019243 227 aIAIVTIaeaGSHIDd-gERSIPVpaya--tdarDPTGAGDTYMAGFIHSYLSaph-dlfRAGCTGAATASIWIE 297 Chloroflexus aurantiacus
ZP_00019726 220 pIGIVTHgaaGATLFi-hGKPHHIpafp--aqesDPTGAGDVFTTAFLIRLWEtgd--pvGAAHFAAAAAACVVE 289 Chloroflexus aurantiacus
AAO78682    203 kEVLVTLgsmGSLIYd-gTDFYRIpaykp-gqvvDATGCGDTYTIGYLYQRVSgas--ieEAGRFAAAMSTLKIE 273 Bacteroides thetaiota...
AAR24468    191 dSVILTDk-eNISLLs-kNRIYSItlpn--ielnDTTGIGDIFCAAFCCTMLKekd--ilWALSFAGGAAQAALE 259 uncultured crenarchae...

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