1MJG,1JQK,1SUF,1OAO


Conserved Protein Domain Family
CODH

?
cd01915: CODH 
Click on image for an interactive view with Cn3D
Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs. Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.
Statistics
?
PSSM-Id: 238896
Aligned: 19 rows
Threshold Bit Score: 839.228
Created: 7-Mar-2002
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:cubane metal cluster (B-cluster) [ion binding site]
Evidence:
  • Comment:The B-cluster coordinates a cubane-type [4Fe-4S] center

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                   #  #    #             #             
1MJG_A       30 DPAVLEMLVKSKDDKVITAFDRFVAQQP------QCKIGYEGICCrFCMAGPCRIKATdgpgsrGICGASAWTIVARNVG 103 Moorella thermoa...
ZP_00089776   7 PVIEGALLKVAQDKGFATARDRLEVMSP------QCGFGELGTCCrICYMGPCRIDPFgngpktGVCGLTPDAMVARNLL 80  Azotobacter vine...
ZP_00298635  19 DPAVRAILEHLDQAGIETSFDRFDAQKP------HCGFGLAGTCCkNCHMGPCRITPKsq---rGVCGADAHLIVARNIL 89  Geobacter metall...
AAR35474     14 DPAAKEMLRIADREGYATIWERYEQQQP------QCSYGQLGTCCrICSMGPCRIDPFgdgptrGVCGATADTMVARNLA 87  Geobacter sulfur...
NP_346761    12 DADKTLRDFICGLNNVETSEHRVESQKN------KCKFGKDGVCCkLCANGPCRITPKsp---rGICGADADTIVARNFL 82  Clostridium acet...
NP_349112    16 HDSVEEMVKKIREDGMSNVFDRYALQEKi-----RCKFCLEGLSCqLCSNGPCRISEKtgq-ekGVCGIGPDAMAMRNFL 89  Clostridium acet...
O28429       10 HESINMMYERVSKEGVTNIVDRFNAQEKg-----RCPFCEKGLSCqLCSMGPCRISKDkp---tGACGIDAAGMVVRNFT 81  Archaeoglobus fu...
Q58138        8 IPEVKEMVEKAKLKGIETPHTRFPNQFP------KCPYGLKGVYCiLCANGPCRITEKtp---yGVCGATADVIVARNLC 78  Methanocaldococc...
Q8TR73        9 HESVQKMYERIKKDNMTNVWDRYEAQGIggvpdrRCTFCMAGARCdLCSNGPCRSDAAkd--krGVCGITADGMAMRMML 86  Methanosarcina a...
Q8TXX3       17 ELVEHAKELNEEIPEIETPHIRWPVQFP------KCPYGKQGVWCnICSNGPCRITEKtp---rGVCGATADVIVARNFL 87  Methanopyrus kan...
Feature 1                                                                                       
1MJG_A      104 LMILTGAAAHCEHGNHIAHALVEMAEGkapdySVKDEAKLKEVCRRVGIevegksVLELAQEVGEKALEDFrrlkgegEA 183 Moorella thermoa...
ZP_00089776  81 RDTVGGTASHVGHARHVLLTLRDALNGka-pyQIKGVSKVMALAKTFGVptegreVNDICRDLVNIALEDFgrq-delPN 158 Azotobacter vine...
ZP_00298635  90 RWTAAGVAAHGARGREVMLALKGAAEGal-dlPILGPEKVVATAKAFGIfdenkaIPQMAGEIALILLEDLcrt-ipgPH 167 Geobacter metall...
AAR35474     88 RMAAVGSSSHSDHGRKVALLLKAVANGsntdyHIADPDKLTAVAERLGIptagrsTAEIAGDVAAVAIDCFgnq-geePI 166 Geobacter sulfur...
NP_346761    83 RAVAAGTACYVHVVETTARNLKALGENk---kPIKGMYTLNKLANMFKIde--kdDHKKAVMIADRVLSDLykp-rfeKA 156 Clostridium acet...
NP_349112    90 LKNIMGAGTYSHHAYEAYRTLKATAEGrt-pfKITDENKLKWMCEKLGIdta-qsINDMAFELAVILEDQQrig-vedQN 166 Clostridium acet...
O28429       82 HKNMLGTEAYTYHAIEAAKTLKATAEGkt-iyEIKDVEKLKWFAKLLGIeg--edVNELAAKVADFVISDLss---leKS 155 Archaeoglobus fu...
Q58138       79 RAVAAGTSCYVHCAENAARALLSAGKGeg-syEIRNEKKLKFLAKKLGFdan-kdAKQLAVEVAEFILDDMykp-rweKS 155 Methanocaldococc...
Q8TR73       87 LRNVMGASTYHYHTDQTIRTLRETAKGkt-pySIREPEKLRTFAGRLGIetl-gsDSEIALYLCEFVEKDFnrp-ayePS 163 Methanosarcina a...
Q8TXX3       88 RHVAAGAACYVHCLENAARALKSVADEes-pyEIADEKALRHAAEVYGLdts-gkPEDVAEEIAEFILEDIyrp-ryeES 164 Methanopyrus kan...
Feature 1                                                                                       
1MJG_A      184 TWLMTTINEGRKEKFRTH------------NVVPFGIHASISELVNQAHMGMDND-PVNLVFSAIRVALADYTGEHIATD 250 Moorella thermoa...
ZP_00089776 159 NWISKRAPAEEQALWSDL------------GLMYSNPHNEIETAMHATSMGNDADpVSLMLRVLKMSLIDGWTGLTLCVD 226 Azotobacter vine...
ZP_00298635 168 RTLEAMATPERLSVWKEL------------DILPVGAYHEVFEALHRTTTGTDGDwENVMRQVLRCGLAFAWSSVMGSAV 235 Geobacter metall...
AAR35474    167 VFMEKYMPKKRFQRLRELeetlyrttgaktGLLPRAIDREAVDILHRTHFGCDHDpLSLVAQSVRCSLSDGWGGSLIATE 246 Geobacter sulfur...
NP_346761   157 ELVSEIAYAPRLKKWQEL------------NILPGGAKSEVFDAIVKTSTNLNSDpVDMTVNCLTLGISTGLYGLTLTNL 224 Clostridium acet...
NP_349112   167 VMVEAFAPKKRIEAWKKL------------GIYPAGTVHEEQNCVASCLTNVDGShISLAMKALRLGIATIYNTQIGLEM 234 Clostridium acet...
O28429      156 RLVEIFAPEKRKELWEKL------------GIFPSGVFQELLTMGSSAMTNVDSNyVSLAKKSMSMSIATCMAAQIALET 223 Archaeoglobus fu...
Q58138      156 ELVPKLCPEKRLEVFEKL------------DILPGGAKGEIVDALTKTSTNLNSNpMDLLVHCLRLGLHAGFTGLLMTCW 223 Methanocaldococc...
Q8TR73      164 RIVEILAPPERKKRWEEL------------DIFPGGIYGEMMLSTSSCLTNVDGYyASLALKAMRLGIAMAYQSQIVNEY 231 Methanosarcina a...
Q8TXX3      165 EVFKAVVPDWRIEMYEEM------------GLIPGGAKSEIHDALVKTSTNLNSDpVDMLLHVLRLGLITGPVALFGVET 232 Methanopyrus kan...
Feature 1                                                                                       
1MJG_A      251 FSDILFGTPQPVVSEANMGVLDPDQVNFVLHGHNPLLSEIIVQAAREMeg--eAKAAGAkGINLVGICCTGNEVLMRQgi 328 Moorella thermoa...
ZP_00089776 227 LQDILFGVPEIAVTEAAVGVLEENSVNVAAHGHNPVLSEKILEWAEKLeg--dAIAAGAeRINVVGVCCTGNELSMRHgv 304 Azotobacter vine...
ZP_00298635 236 AMDCLYGLPKRSRVSTNVGAITENTVNIAVHGHSPVLVAAILAAARRTelieeAKEAGAeTVRLYGICCSGHSALAKFgd 315 Geobacter metall...
AAR35474    247 LQDILLGSPIIRPVKANLGVLEAESVNVVVHGHEPILSAKVVEMAQSPecraaAEAVGAkRVNVVGLCCTGNEVLLRQgv 326 Geobacter sulfur...
NP_346761   225 LNDVILGEPVIRQANVGFKVVDPDYINIMITGHQHSVIEHLQERLIDEditkkAQAIGAkGFKLVGCTCVGQDLQLRGeh 304 Clostridium acet...
NP_349112   235 VQDILFGTPTPHEVNMDLGIMDPEYVNIVFNGHQPWIGAATILKAKTPeiqdmAKQAGAkGLRVVGSIETGQELLQRFpv 314 Clostridium acet...
O28429      224 IQDILFGTPMPHESHSDLGILDPEYVNIAVNGHEPFVGIALIKLAEREeiqekARKAGAkGLRIIGFIETGQEILQRVds 303 Archaeoglobus fu...
Q58138      224 LNDILFGSPKITVVENGFSSVKPNNVNIMITGHQHALIQPLCEAAMEEdlikmAKEAGAdEIKIIGATCNGQDMETRIah 303 Methanocaldococc...
Q8TR73      232 CQDILFGIPKPHTMRVDLGVLDPEYVNVLPNGHEPFLGFAMVQLARKPewqekAKAAGAkGLRVIASIETGQEMIQRWee 311 Methanosarcina a...
Q8TXX3      233 INDILFGSPKITQTEGGPGILDPDYVNIMTTGHQMALMKYLTDAAEKLee--eAKAAGAkGIRIIGATCVGDDFEARAeh 310 Methanopyrus kan...
Feature 1                                                                                       
1MJG_A      329 pl------vtsfASQELAICTGAIDAMCVDVQCIMPSISAVAECYHTRIITTADNAKIPGAYHIdyq-----tatAIESA 397 Moorella thermoa...
ZP_00089776 305 kl------aahnSQTELILATGAVDAMVVDIQCIWPQLAQVAKCFDTAFITTDAMVRIPDAIHIpfe-----phhADESA 373 Azotobacter vine...
ZP_00298635 316 vtp-----lsnaMGAELVLATGALDLWVADVQDVFPGIMDVAACFHTRVVTTSDSARLPGAEHIafdhhhsnldqADQLA 390 Geobacter metall...
AAR35474    327 gm------agneSHSELAIMTGAVDAMVVDVQCIYPALADLASCFHTKFVTTSEQAKIPGALHIqfe-----eheADAIA 395 Geobacter sulfur...
NP_346761   305 ykevfsghagnnFTSEALIATGGIDLIMSEFNCTLPGIEPIAEEFEVKMICVDDVAKKKNADFIkys-----yeeRENIT 379 Clostridium acet...
NP_349112   315 devfv-ghmgnwLAIEPLLATGTVDIFAMEENCSPPAIDMYAEKYQVTLAAVSTIIDLPGVNYKfpyd----paqADETA 389 Clostridium acet...
O28429      304 pvfa--givgnwIVQEYALATGCVDVFAADMNCTLPSLPEYQRYGVKIVPVSRLVRLKGIDEGLdye-----pekAEEIA 376 Archaeoglobus fu...
Q58138      304 lpesfvgyiannFTTEPLVATGLIDAVVSEFNCTFHGLKFVAEKTKTKLICIDDMAYVEGAEYIpwe-----penAKEKA 378 Methanocaldococc...
Q8TR73      312 ddafy-gftgnwISQEAVLASGSVDLFAADMNCSLPVAPLYAEKYGFKLMPVSELIAFEDITERlnyn----pveAGRQA 386 Methanosarcina a...
Q8TXX3      311 lpdtyagfagnnFATEALAATGLVDAIVSEFNCTFPGLKFYKEKLDVELVAVDDVAKVWGAELIlwd-----perAEEVA 385 Methanopyrus kan...
Feature 1                                                                                       
1MJG_A      398 KTAIRMAIEAFKERKesnr-pvyIPQIKNRVVAGWSLEALTKLLAtqnaqnpirVLNQAILDGELAGVALICGCNnlkg- 475 Moorella thermoa...
ZP_00089776 374 REIVQKAIDAFRRRRgkp---vdIPRHKSTAVAGLSVEAIVDLLAkldaedplkPVIDNVANGNIFGFVGVVGCSsikf- 449 Azotobacter vine...
ZP_00298635 391 QRIVRRGIQAFGERQagk---vfIPPARMDAEVGFSVENITATFGga------dRLLEHLQSGRIRGVVNLVGCNnpkv- 460 Geobacter metall...
AAR35474    396 TRIIKTAIDAFPNRNkar---vyIPQHTSTAIVGFTVEEILKALGgt-----pqPLIDLIVTGTIKGVAGIVGCNnvkv- 466 Geobacter sulfur...
NP_346761   380 DSIIEEALKSYENRRkdvtinipKDHGYDDVVTGVSEKSLKDFLGgt-----wkPLVDLIASGKIKGVAGVVGCSnltak 454 Clostridium acet...
NP_349112   390 QRLIELGIENFKKRKerqi-kphVPQKIQKAIAGFSTEAVLGALGnk-----ldPLVDVIAKGQIKGVVALANCStlrng 463 Clostridium acet...
O28429      377 MKLIDMAIENFKQRDksk---avKVEQKKKIVVGFSPEAILKALNgd-----lnVLLDAIKKGDIKGVVALVSCTtlkng 448 Archaeoglobus fu...
Q58138      379 REIIKKAIEAFKERKgmq---kdYYDEKVKSVVGVGEESLVEFLGgs-----vkPLIELIASGKIKGVVGVVGCSnlasg 450 Methanocaldococc...
Q8TR73      387 AKLLNMAVENFKNRKnsg--epvLNLPVKEAVVGFSTESILDALGgt-----ldPLLDAIKSGAIKGVVGMVSCTtlrdy 459 Methanosarcina a...
Q8TXX3      386 EEAVQRAIEAFKERRskhedkimEPKHRHENVVGFGYFSIEEAVGw-------eNVLKLIEEGTIRGVCAIMGCTnlssg 458 Methanopyrus kan...
Feature 1                                                                                       
1MJG_A      476 fqdNSHLTVMKELLKNNVFVVATGCSAQAAGKLGLldpanvetyCGDGLKGFLKRLGeganieigLPPVFHMGSCVDNSR 555 Moorella thermoa...
ZP_00089776 450 rdnAMTEEMVKHLLRQNVLVLTTGCTAHICAQDGLmtseatyryCGDGLKAVLEVLGkaagldgpLPPVWHMGACVDNSR 529 Azotobacter vine...
ZP_00298635 461 vyeEAVVKVAEELIAHDVVLLTNGCAAFALLKMGFclpe-gvtgAGDGLKSVLGPLN--------LPPVWHMGECLDNAR 531 Geobacter metall...
AAR35474    467 qqdFFHRTLTEELIKRDILVIGTGCWAIAAAKSGLmdlp-arelAGPGLQAVCGQLG--------IPPVLHMGSCVDCSR 537 Geobacter sulfur...
NP_346761   455 ghdVFTVELTKELIKRNIIVLSAGCSSGGLENVGLmsps-aadlAGDSLKEVCKSLG--------IPPVLNFGPCLAIGR 525 Clostridium acet...
NP_349112   464 pqdWVTINLTKELIKRDILVVSGGCGNHALEVAGLctldaanniAGNGLKAVCNALK--------IPPVLSFGTCTDTGR 535 Clostridium acet...
O28429      449 phdSSTVTIAKELIKRDILVLSMGCGNAALQVAGLtsme-avelAGEKLKAVCKALN--------IPPVLSFGTCTDTGR 519 Archaeoglobus fu...
Q58138      451 ghdNIIVTLTKELIKRDILVLAGGCVNSPLKHAGLfdpa-saelAGENLKEVCKSLG--------IPPVLNFGACLSIAR 521 Methanocaldococc...
Q8TR73      460 gqdVHSVAVVKELIKRNILVLSLGCGNGAMQVAGLcspe-trefAGDSLKAVCEALG--------VPPVLSYGTCTDTGR 530 Methanosarcina a...
Q8TXX3      459 ghnVPAVELAKEMIKRDVLVLGAGCVNGAFANAGLfnpe-aaelAGDNLRQVCEELG--------IPPVLHYGPCLAIGK 529 Methanopyrus kan...
Feature 1                                                                                       
1MJG_A      556 AVDLLMAMANDL------GVDTPKVPFVASAPEAMSGKAAAIGTWWVSLGVPTHVGTMPPVEGSDLIYSILTQIASDVYG 629 Moorella thermoa...
ZP_00089776 530 IVDLMVALAERL------GVKVGQLPAVGSAPELVQEKAVSIGGSFLALGVSCHIAPAPRILGGPMVTKLLTEDLQELTG 603 Azotobacter vine...
ZP_00298635 532 ASALFKGLALTA------AEPLRRLPCAFSSPEWSNEKGLGAALGFRLLGLNSYHCIAPPVAGSDKVARFFAEATRETLG 605 Geobacter metall...
AAR35474    538 MLNLAGALADHL------QVDISDLPLVGSAPEWTTEKAVAIGTYFVGSGIPVHLWPLPPILGGPQVTKILTSDAKDVLG 611 Geobacter sulfur...
NP_346761   526 LEIVATELAEYL------GIDIPQLPLVLSAPQWLEEQALADGAFGLSLGLPLHLAISPFIDGSAVVSKLLKEDLTDITG 599 Clostridium acet...
NP_349112   536 ISMLVTALAEHL------NVDVPQLPIAVTAPEWMEQKATIDGIFALAYGAYTHLSPTPFMTGARQLVDLLTNKAEDVTG 609 Clostridium acet...
O28429      520 AAYLVRLIADAL------GVDVPQLPVAVTAPEYMEQKATIDAVFAVAYGLTTHVSPVPPITGSEDAVKLFTEDVEKLTG 593 Archaeoglobus fu...
Q58138      522 IEQVAVAIAEEL------GVDIPDLPVAASAPQWLEEQALADATYAVDMGFTVHVSPVPFVTGSELVTKVLTEAVEGLTG 595 Methanocaldococc...
Q8TR73      531 LADFLGAISAVM------GVPIPDLPIAAAAPEYMEQKATIDAIFALALGLYTYVNPVPTVTGAPDLVKLLTEDCREVTG 604 Methanosarcina a...
Q8TXX3      530 IEHLVFEIAEILrektgeEIDIPDVPAVASAPQWLEEQALADASSALALGITLHVSPVPPVTGSELVTKTLLEDLPDLTG 609 Methanopyrus kan...
Feature 1                                    
1MJG_A      630 GYFIFEMDPQVAARKILDALEYRTWKLGV 658 Moorella thermoacetica
ZP_00089776 604 AVVRVELEPKGAADWMIAHIAGKRAALGI 632 Azotobacter vinelandii
ZP_00298635 606 SVMVVDGDPVALARRIVADFDERRAALGW 634 Geobacter metallireducens GS-15
AAR35474    612 GWFFVEEDPKATADRMEQIIMERRAALGI 640 Geobacter sulfurreducens PCA
NP_346761   600 GKLIIEEDVIKAADKLEREIIDRREKLGL 628 Clostridium acetobutylicum ATCC 824
NP_349112   610 GKIALGDDPMKVANDIEDHIMRKRKELGL 638 Clostridium acetobutylicum ATCC 824
O28429      594 GKVVVEEDPLKAAELLEKVIEEKRKALGI 622 Archaeoglobus fulgidus
Q58138      596 GKLIPEPNPYKAADLLEQTIMEKRKKLGI 624 Methanocaldococcus jannaschii
Q8TR73      605 GVLNVEKDAVKAVDGIEQHIMEKRKKLGI 633 Methanosarcina acetivorans
Q8TXX3      610 GELIVETDMKRAGEILAEKIEEKRKRLGI 638 Methanopyrus kandleri

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap