1E2U


Conserved Protein Domain Family
HCP

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cd01914: HCP 
Click on image for an interactive view with Cn3D
Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH). The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Statistics
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PSSM-Id: 238895
Aligned: 19 rows
Threshold Bit Score: 658.962
Created: 7-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
cubane metalhybrid metal
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:cubane metal cluster [ion binding site]
Evidence:
  • Structure:1E2U_A; Desulfovibrio vulgaris HCP coordinates a cubane-type [4Fe-4S] cluster

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #           #      #                                                       
1E2U_A        1 MFCFQCQETak---ntGCTVK-GMCGKPEETANLQDllifvlrgiaiygeklkelgqpdrsnddfvlqglfatitnanwd 76  Desulfovibrio vu...
AAQ18177      1 MYCIQCEQTlhtatgtGCRFArGDCGKTAAISDQQDalvaallavsshadaarkvglidaevdafvpqalfatltnvnfd 80  Rhodobacter caps...
ZP_00270361   1 MYCYQCEQTaq---gvACVTV-GLCGKTAEVAALQDllieaakglsqyayrlrqlgialpeidafvldalfttvtnvsfd 76  Rhodospirillum r...
P96095        2 MFCYQCEQTtrspagiGCTSEpGTCGKDEATAVLQDilthlmkgiasmragramgvadrrtddfifyglfttltnvnfta 81  Acidithiobacillu...
O27502        1 MFCYQCSQTvr---grACTIR-GVCGKEPTVARLQDnl------------------------------------------ 34  Methanothermobac...
Q9X0Q4        3 MFCYQCSQTan---gtGCTEY-GVCGKSPTVARLQDnl------------------------------------------ 36  Thermotoga maritima
ZP_00129319  39 MFCNQCEQTak---gtGCTAM-GVCGKQPEVSDLQDatvyalrglaiaaqdaaakgvreqgmghytaarlfstltnvnfd 114 Desulfovibrio de...
P75825        1 MFCVQCEQTirtpagnGCSYAqGMCGKTAETSDLQDlliaalqglsawavkareygiinhdvdsfapraffstltnvnfd 80  Escherichia coli
ZP_00213344   1 MFCYQCEQTdrtgarpGCASAkGNCGKDATTADLQDllvhavkgiaqygaiaramgapdrdadrfvlyamfttltnvnfh 80  Burkholderia cep...
ZP_00161600   1 MFCNQCEQTtr---gdVCHQW-GACGKSPEVDALQDllvhclrglsqvalqakslglatretdeftcemlfstltnvnfs 76  Anabaena variabi...
Feature 1                                                                                       
1E2U_A       77 darfeamiseglarrd---klrnaflavykakngkdfseplpeaatwtgdstafaekaksvgilatenedvrslrelliI 153 Desulfovibrio vu...
AAQ18177     81 perlagyirkaqel-------rnrlqlalagkplalpaladadwpfaaaqqaeagkivalnrdaarigedvlglrllclY 153 Rhodobacter caps...
ZP_00270361  77 parleeqlreaaclrdqlrarydaacaarhtspetlsgpalwqpastraglvgtgeaasiahrltaqgadltglqdlllY 156 Rhodospirillum r...
P96095       82 trfvhliqeaskrreri-kllyeeaareqgktpeilsgpalfqpadsleqllrqapsvainadvehlgsdvigaralilY 160 Acidithiobacillu...
O27502       35 ------------------------------------------------------------------------------lF 36  Methanothermobac...
Q9X0Q4       37 ------------------------------------------------------------------------------vF 38  Thermotoga maritima
ZP_00129319 115 pdrfvpwvheit-----------amrddlvrkaglsytsgpaafvpgadaaaivqqaaehgtltlapdedirscmqillY 183 Desulfovibrio de...
P75825       81 sprivgyareaialre---alkaqclavdanarvdnpmadlqlvsddlgelqrqaaeftpnkdkaaigenilglrllclY 157 Escherichia coli
ZP_00213344  81 aarfvallreaaqmrdrvkaacdasaraagtvvpaqhgpamwqpaddlaglleqaarvgvdngldkvgadivglralvlY 160 Burkholderia cep...
ZP_00161600  77 tsdfisfvnraialre----slklqiqatgnaviqsainsfqpasdtqkqiqqgkdlefefisqsaknvdifslkltllY 152 Anabaena variabi...
Feature 1                                                                                       
1E2U_A      154 GLKGVAAYAEHAAVLGFRKTEIDEFMLEALASTtkd--lsVDEMVALVMKAGGMAVTTMALLDEANTTTYGNPEITQVNI 231 Desulfovibrio vu...
AAQ18177    154 GLKGIAAYMEHARVLGQTDTQVAAGFHAHMAYLase-ptdAKGLFAEALAIGTLNFRVMEMLDAGATGTFGDPQPTPVNR 232 Rhodobacter caps...
ZP_00270361 157 GVKGMAAYACHARILGQTDESVAAFVHEVLTTLaev-padAEALLGLVLRCGTVSLTVLDLLDRANTGAYGDPQPTPVLM 235 Rhodospirillum r...
P96095      161 GMKGVALIAQHARVLGYQSDEVMPQAEEILDYLasn-ptdLDEMLEESLEVGRLNLKVMELLDVANTDSFGAQEITSVRI 239 Acidithiobacillu...
O27502       37 AIKGISAYLYHARELGYTDEEVDAFLERGFYSTltnvnfdAGEFIDLALEAGEMNIRTMKLLKKAHIDTYGEPEPTEVRV 116 Methanothermobac...
Q9X0Q4       39 AIKGISAYYYHARELGYDDPEIAGFLDEALYSTltnvnfdAQSFVEYALEAGRMNLKAMQLLKKAHIETYGEPTPVEVET 118 Thermotoga maritima
ZP_00129319 184 GMKGVAAYADHAAILGQEDNAVYDFLYKGLAAGfdgkardLNDWVGLLLECGNVNLRTMELLDAGNTGTYGHPVPTEVPL 263 Desulfovibrio de...
P75825      158 GLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLgtw-padMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNV 236 Escherichia coli
ZP_00213344 161 GLKGVCAYAHHARVLGYERDDIYEGIEAALAFLard-pddVNALLTQALGLGRLNLTVMELLDSANTGRFGAQQPTAVRV 239 Burkholderia cep...
ZP_00161600 153 GLKGVAAYAFHALELNQHDESLYIFFHEVLANLdaq-dksLQDWLDLTLKVGQMNLKAMELLDAGNTETFGHPTPTTVPL 231 Anabaena variabi...
Feature 1                                                                                       
1E2U_A      232 GVGKNPGILISGHDLKDMAELLKQTEGTGVDVYTHGEMLPANYYPAFKK-YPHFVGNYGGSWWQQNPEFESFNGPILLTT 310 Desulfovibrio vu...
AAQ18177    233 RPVAGKAILVSGHDLHDLLRILEQTAGRGINVYTHGEMLPAHGYPAFHA-HPHLIGNYGSAWQNQQAEFAAFPGAIVMTS 311 Rhodobacter caps...
ZP_00270361 236 GHRAGKAILVSGHDLKDLAVLLEQTVGLGVDIYTHGEMLPAHGYPELKK-YPHLVGHYGGAWQRQRSEFAAFPGPILMTT 314 Rhodospirillum r...
P96095      240 SPIQGKAILVSGHDLHDLKQILEQTKDQGINVYTHGEMLPANAYPLLKA-YPHLAGNLGGAWQDQQREFADFPGPIVMTS 318 Acidithiobacillu...
O27502      117 GALEGPAIIATGHSLRALEELLKQTEGTGINVYTHSELLPAHGYPGLRK-YPHLAGQLGGPWFDQKDTFSRYTAAILGTS 195 Methanothermobac...
Q9X0Q4      119 GTKKGKGIIVTGHNLKALEELLKQVEGTNVYVYTHSEMLPAHGYPGLRK-YKNLIGNLGKAWYDQRKLFAEYPVAILGTS 197 Thermotoga maritima
ZP_00129319 264 GHRKGKAILVSGHDLRDLHELLKQTEGTGINIYTHGEMLPCHGYPELKK-FPHFYGHFGTAWQNQHKEFPQFPGAILFTT 342 Desulfovibrio de...
P75825      237 KATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRK-FKHLVGNYGSGWQNQQVEFARFPGPIVMTS 315 Escherichia coli
ZP_00213344 240 SPVAGKAILVSGHDLGDLHALLEQTAGTGIHVYTHGEMLPAHAYPVLKA-FPHLVGNYGGAWQDQQSDFAHFPGPILMTS 318 Burkholderia cep...
ZP_00161600 232 GHTVGKAILVSGHDLLALKAVLEQTSGTGIKVYTHGELLPAHGYPKLKQtHPHLYGHYGTAWQNQTHEFERFPGAIVMTT 311 Anabaena variabi...
Feature 1                                                                                       
1E2U_A      311 NCLVplkkentYLDRLYTTGVVGYEGAKHIadrpaggakDFSALIAQAKKCPp-pVEIETGSIVGGFAHHQVLALADKVV 389 Desulfovibrio vu...
AAQ18177    312 NCLIdpr-tgaYQDRIFTRSIVGWPGVRHIeg------eDFAEVIACAEALPgfaATEAPVTQLTGFGRNALMTAAPAVI 384 Rhodobacter caps...
ZP_00270361 315 NCIQnpt--aaYRDRLFTCGLVAHPEATALsg------rNFAPLIASALAAPgfaEDGPVRHHLAGFGHKAVLGVAPQII 386 Rhodospirillum r...
P96095      319 NCIIepg--rsYKNRIFTLGPVGWPGVRHIdn------gDFTPVIQAAKALPgftADAKEQRITIGFGHHTLLGVADKIV 390 Acidithiobacillu...
O27502      196 NCVLlpr--ddYRDRMFTCGVAALPGVEHLeg------yDFSPLIDKALELPp-lSEEDATTLTTGFGLSTILSLADKIR 266 Methanothermobac...
Q9X0Q4      198 NCVLips--esYRDRMFTTSIARLPGVKHIdg------yDYTEVIEKAKSLPdleEKPGSYKLRTGFSTSVVVSLADKIK 269 Thermotoga maritima
ZP_00129319 343 NCIQkpq--asYQDNVFTTGLVGWPGLTHCen------rDFSAVIKRAQELPgftEDAPGKTVMTGFGHNAVLGVAGAVV 414 Desulfovibrio de...
P75825      316 NCIIdpt-vgaYDDRIWTRSIVGWPGVRHLdg------dDFSAVITQAQQMAgfpYSEIPHLITVGFGRQTLLGAADTLI 388 Escherichia coli
ZP_00213344 319 NCIIepm--pqYRQRIFTTGPVGWPGVRHLeh------hDFSTLIRAAQALPgfpATAAEETITVGFGRHAVLGVADKVI 390 Burkholderia cep...
ZP_00161600 312 NCLMpph--etYKDKVFTLGPVGYPGLQHIsi------hDISLVIQKALELPgftEDSEQKTVTTGFARNAVLGVADTVI 383 Anabaena variabi...
Feature 1                                                                                       
1E2U_A      390 EAVKSGAIKRFVVMAGXDGRQKSRSYYTEVAENLPKDTVILTAGCAKYRYNKLNLGDIGGIPRVLDAGQCNDSYSLAVIA 469 Desulfovibrio vu...
AAQ18177    385 ERVKVGKIRHFYLIGGCDGARAERAYYADLARMLPQDTVVLTLGCGKFRLDGIDFGAVDGLPRLLDVGQCNDAYAAIRLA 464 Rhodobacter caps...
ZP_00270361 387 DAVKAGAIRRFVLIGGCDGHESARSYFDDLAGSLPQDAVVLTLGCGKFRVIDHDMGTIAGLPRLLDMGQCNDAYSAIKVA 466 Rhodospirillum r...
P96095      391 DAVKHGDIRHFFLVGGCDGVSPARNYFTEVADNAPADSVVMTLGCGKYRFNKHEFGDIGGIPRLLDIGQCNDAHSAIRVA 470 Acidithiobacillu...
O27502      267 ELVEDGKIRRFFLVGGCDSPLPRAKYYTEFVRKLPEDTVVLTLACGKYRFNSMDLGDIEGVPRLIDLGQCNDAIVAVELV 346 Methanothermobac...
Q9X0Q4      270 ELVEAGKIKHFLVVGGCDVPFKRNEYYREFVQKLPKETVVITLACGKFRINDLDLGDIDGIPRLIDVGQCNDTIVAIEIA 349 Thermotoga maritima
ZP_00129319 415 DAVKSGAIRHFFLVGGCDGAKPGRNYYTEFVEKAPADTVILTLACGKFRFFDKELGTIGGIPRLLDVGQCNDAYSAIQIA 494 Desulfovibrio de...
P75825      389 DLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILA 468 Escherichia coli
ZP_00213344 391 DAVKAGQIRHFFLIGGCDGAAPGRNYYTEFAEQAPDDTVVMTLGCNKYRFNRHAFGDIGGIPRLLDVGQCNDSYSAIRIA 470 Burkholderia cep...
ZP_00161600 384 NAVKQGDIRHFFLVGGCDGAKPGRNYYSDLVEKIPNDCVVLTLGCGKFRFFDQNLGDIGGIPRLLDLGQCNDAYSAIQIA 463 Anabaena variabi...
Feature 1                                                                                       
1E2U_A      470 LKLKEVFGldDINDLPVSYDIAWYEQKAVAVLLALLFLGVKGIRLGPTLPAFLSPNVAKVLVENFn--IKPIGTVQDDIA 547 Desulfovibrio vu...
AAQ18177    465 LALAEAFDc-GVNDLPLTLVLSWFEQKAIVILLTLLALGVKDIRVGPTAPGFLTPNLIATLNAQFg--LRLISTPEETMA 541 Rhodobacter caps...
ZP_00270361 467 QALAEAFGv-GVNDLPLSLVLSWFEQKAVTVLLALLALGVRNIRLGPNLPAFITPPVLKVLVDRFg--IMPVGTVAEDLA 543 Rhodospirillum r...
P96095      471 GALAEAFNc-GVNDLPLSIMLSWFEQKATAIHLSLLALGIKGIKLGPTLPAYLTPTLVQKLQSRFdldLDLIGEAQADLQ 549 Acidithiobacillu...
O27502      347 EALSNLFQm-DINELPLSIILSWMEQKAAAILWSLLSLDLKGMYIGPILPGWANEDIVKFLVDNYd--LTPIGDPEEDIR 423 Methanothermobac...
Q9X0Q4      350 QALAKVFGv-EVTELPLTLVLTWMEQKAVAILWTLLALGLKNIYVGPVLPAWVNEDILKVLTAEFg--LKTISEPEKDIK 426 Thermotoga maritima
ZP_00129319 495 VALAKAFDc-GVNDLPLSLVLSWYEQKAVAILLTLLALGIKDIRLGPSLPAFVSPNVLNFLVENYn--IKPISTAEEDLK 571 Desulfovibrio de...
P75825      469 VTLAEKLGc-GVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFg--LRSITTVEEDMK 545 Escherichia coli
ZP_00213344 471 TALADAFEc-GVNDLPLSLVISWFEQKAAAVLLTLLALGLRNIRLGPTLPAFVTPGVLAVLVEQFg--IQPIGDAGTDLA 547 Burkholderia cep...
ZP_00161600 464 VALANTFEv-NVNQLPLSMILSWYEQKAIAVLLTLLYLGIQNIRIGPTLPAFLTPNVVKLLSETFh--LQLITTPEQDLA 540 Anabaena variabi...
Feature 1          
1E2U_A      548 AMM 550 Desulfovibrio vulgaris
AAQ18177    542 ETL 544 Rhodobacter capsulatus
ZP_00270361 544 AMG 546 Rhodospirillum rubrum
P96095      550 AAL 552 Acidithiobacillus ferrooxidans
O27502      424 KIL 426 Methanothermobacter thermautotrophicus str. Delta H
Q9X0Q4      427 EIL 429 Thermotoga maritima
ZP_00129319 572 AIL 574 Desulfovibrio desulfuricans G20
P75825      546 QLL 548 Escherichia coli
ZP_00213344 548 ASL 550 Burkholderia cepacia R18194
ZP_00161600 541 VCL 543 Anabaena variabilis ATCC 29413

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