1IJE,1JNY,1R5N,3AGJ,3MCA,3P26


Conserved Protein Domain Family
EF1_alpha

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cd01883: EF1_alpha 
Click on image for an interactive view with Cn3D
Elongation Factor 1-alpha (EF1-alpha) protein family
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Statistics
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PSSM-Id: 206670
Aligned: 84 rows
Threshold Bit Score: 312.888
Created: 6-Jan-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Structure:1IJE: Saccharomyces cerevisiae eEF1A binds GDPNP, defined using 3.5 A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # ####                                                                  
1IJE_A      9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTiekfekeaaelGKGSFKYAWVLDKLKAERERGITIDIALWKFETpKYQVT 88   baker's yeast
AAF74406  164 NIVFIGHVDAGKSTLCGHVLYQAGCVDQRTieqyqaesakeGRGSWYFSWVMDLSKEERSKGKTEEVGVAHFETaQNKYT 243  Trichomonas vagin...
AAF74407  421 SLVFIGHVDAGKSTISGNLMYLMGAVDQRTiqkykeeakekNRESWWLAYVMDVSEEEKAKGKTVEVGRANIETpKKRWT 500  Sterkiella histri...
AAF74408  311 SLVFIGHVDAGKSTICGNLMFMTGMVDERTtekfkqeakekNRDSWWLAYVMDINDDEKSKGKTVEVGRATMETpTKRYT 390  Euplotes aediculatus
AAF97824  103 NVVFIGHVDAGKSTIGGQILFLSGQVDDRQiqkyekeakdkSRESWYMAYIMDTNEEERLKGKTVEVGRAHFETeSTRFT 182  thale cress
CAD25504   15 NIVFVGHVDAGKSTICGQILVQMGLVDPRTlekyrqmsreqNRESWYLSWCLDTNPEERERGKTTEVGTASFELpHRRVN 94   Encephalitozoon c...
AAO61461  119 NIVFLGHVDAGKSTLSGSIMVLTGQVDPHTlakyereakenHREGWIYAYIMDTNEEERTKGKTVEVGRAHFETtKKRYT 198  Dictyostelium dis...
CAI76546  104 NIVFIGHIDAGKSTTCGNILYLSGYVDERTiekygkeakekNRESWFLAFIMDTNEEERERGKTIEVGRAKIETkNRRFT 183  Theileria annulata
XP_650203  63 NIIFIGHVDAGKSTTSGNILFQSGNIEQRIidkfekeakenQRESWWLAYIMDQIEEEKSKGITIDVGRALFETeKRRYT 142  Entamoeba histoly...
XP_828690 262 NIVFCGHVDAGKSTISGHLLMEKGLVDQREmeklrreaevhHREGWEYAYVMDVSEDERTKGITRETGAAYVETeKRRIT 341  Trypanosoma bruce...
Feature 1                                                                     ## #            
1IJE_A     89 VIDAPGHRDFIKNMITGTSQADCAILIIAGGVgefeagiSKDGQTREHALLAFTLGVRQLIVAVNKMDsv--kWDESRFQ 166  baker's yeast
AAF74406  244 ILDAPGHRSYVPQMIGGAVQADVAVLVISARNgefeagfENGGQTSEHLLIARTAGVREIIIVVNKMDdptvkWSKERFD 323  Trichomonas vagin...
AAF74407  501 IFDAPGHKNYVPNMIMGAALADFGALVISAKKgefesgfEMEGQTREHIQLAKSLGISKIVVAVNKMDepsvkWSKDRYT 580  Sterkiella histri...
AAF74408  391 IFDAPGHKNYVPDMIMGAAMADVAALVISARKgefeagfERDGQTREHAQLARSLGVSKLVVVVNKMDeetvqWNEARYN 470  Euplotes aediculatus
AAF97824  183 ILDAPGHKSYVPNMISGASQADIGVLVISARKgefetgyERGGQTREHVQLAKTLGVSKLIVVVNKMDdptvnWSKERYD 262  thale cress
CAD25504   95 ILDAPGHNQFVFEMINGANRADVGILVVSARInefeagfEKGGQTREHIFLLKAGSVQRLIVLVNKMDdpsveWRKERFD 174  Encephalitozoon c...
AAO61461  199 ILDAPGHRLYVPNMIIGAAQADVGILVISSKKgef-eagVEGGQTIEHARLAKMIGIKYLVVFVNKMDeptvkWSKARYD 277  Dictyostelium dis...
CAI76546  184 ILDAPGHRNYVPNMIDGATQADCGVLIISARKgefetgfERGGQTREHALLAKTLGVSYLIVAINKMDdstcnWSKDRYD 263  Theileria annulata
XP_650203 143 ILDAPGHRSFVPNMISAAAQADIAVLIVSARKgefetgfDKGGQTREHSQLCRTAGVKTVIIAVNKMDektvgWEKSRYD 222  Entamoeba histoly...
XP_828690 342 VLDAPGHKAFVPSMIGGATQADVCVLVISSRTgefetgfEKGGQTREHAMLVRTCGVKQMICVINKMDev--nWSKERYD 419  Trypanosoma bruce...
Feature 1                                 ###                                                 
1IJE_A    167 EIVKETSNFIKKVGYnp---ktVPFVPISGWNGDNMi---------EATTNAPWYKGweketkagvvkgkTLLEAIDAIE 234  baker's yeast
AAF74406  324 QIVTKFTPFIEREIGfkk--dqYTYIPIAALTGFNLk---------QRSNECPWYNGp------------TLFEKLDSLK 380  Trichomonas vagin...
AAF74407  581 EIINGLKPFMQGCGYdpe--kdIVFVPISGLNGDNLkd-------pLNKAVCNWYQGp------------TLLEILDDLE 639  Sterkiella histri...
AAF74408  471 DIVSGVTPFLIEQCGykr--edLIFIPISGLNGQNIe---------KLTPACTWYQGp------------TLIEILDNIE 527  Euplotes aediculatus
AAF97824  263 EIEQKMVPFLKASGYntk--kdVVFLPISGLMGKNMdq-------rMGQEICPWWSGp------------SFFEVLDSIE 321  thale cress
CAD25504  175 EIKTKVGAFVRRMFPt------PVFIPVSGFTGEYI----------KEKGSCPWYDGd------------SFLSELDNVT 226  Encephalitozoon c...
AAO61461  278 EITDKLTVHLKKCGWnpk--kdFHFVPGSGYGTLNVla-------pLAPGVCDWYSGp------------SLIGTLDNLS 336  Dictyostelium dis...
CAI76546  264 GIIKKLKPFLKTCGFteg--kdLSFVPISGLLGQNLidhisdvnykHYDPNAAWYDTsm----------pTLFQLLDNVP 331  Theileria annulata
XP_650203 223 EIVNKVKPFLRQCGFs-----dIYSIPISGFSGLNLtk-------rLDKGVCSWYDGp------------CLVELLDSIK 278  Entamoeba histoly...
XP_828690 420 AILGKLKPFLRQNGYdeekaknLIFIPIAGLTGDNLir-------eTAEGVCPWYKGp------------TMMSFIDELV 480  Trypanosoma bruce...
Feature 1        
1IJE_A    235 QPS 237  baker's yeast
AAF74406  381 PPV 383  Trichomonas vaginalis
AAF74407  640 MPQ 642  Sterkiella histriomuscorum
AAF74408  528 PPK 530  Euplotes aediculatus
AAF97824  322 IPP 324  thale cress
CAD25504  227 IPR 229  Encephalitozoon cuniculi GB-M1
AAO61461  337 GME 339  Dictyostelium discoideum
CAI76546  332 TLD 334  Theileria annulata
XP_650203 279 LVM 281  Entamoeba histolytica HM-1:IMSS
XP_828690 481 LPE 483  Trypanosoma brucei TREU927

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