1U0L,2RCN,1T9H,2YV5,1U0L,2YKR


Conserved Protein Domain Family
YjeQ_EngC

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cd01854: YjeQ_EngC 
Click on image for an interactive view with Cn3D
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases.
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.
Statistics
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PSSM-Id: 206747
Aligned: 456 rows
Threshold Bit Score: 190.302
Created: 6-Jan-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Structure:1U0L_C: T. maritima Yjeq GTPase binds GDP, defined using 3.5 A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                             ## ##                              ##   
1U0L_C     83 ANVDQVILVVTVKMPetSTYIIDKFLVLAEKNelETVMVINKMDLYDed-----dLRKVRELEEiysgLYPIVKTSAKTG 157 Thermotoga maritima
ACB84924   73 ANVDQVIVVTSVKNPkpNLQLVDRLLVWAYFEglQGMVCINKRELDYqk-----aQELAEIYKTs---EINTTLISVKEN 144 Natranaerobius the...
EHI55851   73 ANIDIILTVLSFFKPkpQLCMLDKYLISIKLQgfDAAILWNKNDLSPd------iPDYVKAYKRa---GYENIVISASDG 143 Johnsonella ignava...
A6TRW0     74 ANVDQVIVVFSVTQPdpHLSLLDHFLILAETQniDVVICLNKLDLVQre----dvAELVGIYEKv---GYPVILTSQNDS 146 Alkaliphilus metal...
EFR65303   74 ANVDQAMVFFALRSPnpDATLLDRFLIMMARQevPVFICFNKRDLAEde----eaRRWEEIYTSc---GYDVMLIAAGKE 146 Eubacterium cellul...
ADZ83503   80 ANVDQAMVVFSVSYPqlHIDLLDRFLLHIEKEdiVPYILLNKIDEGNen----eyAELVERYTKi---GYEVICLSAKMK 152 Clostridium lentoc...
EGA92049   74 SNVDQAVVVFAVTEPlpNLNLLDRFLVMMERQeiPVIICFNKIDLSGgk----eiEELRAIYGPa---GYTLHFISTYEA 146 Clostridium sp. 7_...
EFU76954   88 ANIDKVVLVLAVESPspAFYYLDKYLINMSNAgiKVEICWNKTDLNMdk-----aLEYAKIYSDa---GFKNIIASTVED 159 Eubacterium saburr...
EFE92861   77 SNVDQAVVLFSLRDPspSLPLLDRFLIHMEMQeiPVRILFNKADLLVteeereraLELQRIYEGa---SYSVRLLSVRRA 153 Oribacterium sp. '...
EEJ52272   75 SNIDQAALVFAVKEPepSFPLIDRFLLHLEAReiPCMLFFNKRDLLSecea-dyrEKMQSIYEKa---GIPVYFFQSNTK 150 Oribacterium sinus...
Feature 1                          ######                                                     
1U0L_C    158 MgieELKEYLkgkISTMAGLSGVGKSSLLNAINPglklrvsevseklqRGRHTTTTAQLLKFDfGGYVVDTPGFanlein 237 Thermotoga maritima
ACB84924  145 Dl-dHLPKFFenkTSVLAGQSGVGKSSILNTLNPdlnlevnpvsrkagTGKHTTRHCQLLKAG-GGFLVDTPGFnkkklp 222 Natranaerobius the...
EHI55851  144 YgmeDLRAFLkgkTTLFAGPSGVGKSSITNRLFPmadmqtgeisrkieRGKHTTRHSQVFIVDkTTCIFDTPGFtsvsle 223 Johnsonella ignava...
A6TRW0    147 IgleQLEKVLrgkTTVFAGPSGVGKSTLLNRILPhvtlqtgelsskiaRGKHTTRHVELISLEtEGWVVDTPGFsslnid 226 Alkaliphilus metal...
EFR65303  147 EgtdEVRSRLmgkTTVIAGPSGAGKSTFTNLMQSevhmetgdiskklgRGKNTTRHAELLPIGhETFFCDTPGFtsmdip 226 Eubacterium cellul...
ADZ83503  153 InteLLMPKLqnkTTVFAGPSGVGKSTLINTIEEnlkletgevsdkikRGKHTTRHVELIPLSeGGFVLDTPGFtslqle 232 Clostridium lentoc...
EGA92049  147 AgleKLHELIagkTTVLAGPSGVGKSSITNFLQPearmetgvvsekikRGKHTTRHSELFFVEnGTYMMDTPGFssmyie 226 Clostridium sp. 7_...
EFU76954  160 GglkTLKEALkgeVNVLAGASGVGKSSITNILAPeanmdtntvskkieRGRHTTRHSELFMIDnDTFVFDTPGFtsvesp 239 Eubacterium saburr...
EFE92861  154 DcreELLSLFrgkSSVLSGPSGVGKSSLINLIHPearmetgelsrkirRGKNTTRHTEFFYLDeESYVMDTPGFsslyvs 233 Oribacterium sp. '...
EEJ52272  151 EdreEILKLLkgkTTVFSGPSGVGKSSMINLLLEdrrmetgslsekikRGKNTTRHAEFFSLGeDSYVLDTPGFtslfpp 230 Oribacterium sinus...
Feature 1                                                                 
1U0L_C    238 diePEELKHYFKEFg--dKQCFFsDCNHVd--EPECGVKEAVengeiaesRYENYVKMFY 293 Thermotoga maritima
ACB84924  223 eivPEQLELAFPEIkkhsSDCKFnDCSHRk--EPDCQVKKLVgtdi-pttRYEHFVKFFE 279 Natranaerobius thermophilus JW/NM-WN-LF
EHI55851  224 gleKESLREYYPEFtkpgKKCRFaLCSHIs--EPGCAVKQALddntvsrlRYDNYVKIYN 281 Johnsonella ignava ATCC 51276
A6TRW0    227 flkEEELADYFIDFepfaKDCRFlSCVHLn--EPICGVKTALkagqlvqsRYNSYLQMIG 284 Alkaliphilus metalliredigens QYMF
EFR65303  227 dmePEELQQYFPEFapyePGCRFqGCAHIh--EPSCGVKEALaeqkickeRYENYCRFYE 284 Eubacterium cellulosolvens 6
ADZ83503  233 gmeADQLQYYFPEFdaflGSCKFrGCTHLh--EPGCEVIKALekgeiyeeRYEAYAAYYK 290 Clostridium lentocellum DSM 5427
EGA92049  227 dlePNELKDYFPEFseyeEECRFlGCIHVg--EKVCGVKTAVadgkisrsRYDNYLLLYQ 284 Clostridium sp. 7_3_54FAA
EFU76954  240 tfdKEELRFHFNEFtkyeGKCRFaGCMHIn--EPDCAVKEALekeyisesRYQSYKKMYE 297 Eubacterium saburreum DSM 3986
EFE92861  234 gieAERLRYFYPEFekfrGECRYkSCVHIgepLRDCRVKRALsegeipreRYESYRQLYR 293 Oribacterium sp. 'Oral Taxon 078' str....
EEJ52272  231 disPENLRYFYPEFeeyrQSCRYnTCYHLgekKQDCGVKQAVekgeiapeRYESYKSLYQ 290 Oribacterium sinus F0268

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