Conserved Protein Domain Family
XynB_like

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cd01833: XynB_like 
SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Statistics
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PSSM-Id: 238871
Aligned: 29 rows
Threshold Bit Score: 123.114
Created: 17-Aug-2004
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:active site [active site]
Evidence:
  • Comment:by similarity to other members of this super-family
  • Comment:the active site resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases
  • Citation:PMID 7773790

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                                                                       
CAA84537    439 IKILPAGDSITNGdgeqggyrkylfdalsklgyt--------------------------------kidmvgpnrdrsnt 486 Ruminococcus fla...
EAQ86418     26 VRIMALGDSITGSpgcwrallwrelqdagiq--------------------------------------ntdfvgtlpgq 67  Chaetomium globo...
ZP_01086237   2 LTIMPMGDSITHGfnvpggyrkpldellrsl-------------------------------------glspnfvgrysq 44  Synechococcus sp...
CAB55348     44 IKIMPLGDSITYGmadeggyrkylsyflqqkgytnv----------------------------dlvgpegkdsasfnyn 95  Ruminococcus fla...
CAD91236     32 IRIMPLGDSITGSpgcwrallwnrlqsaght--------------------------------------didfvgtlppq 73  Nonomuraea sp. A...
EAQ90467     11 IKVMIVGDSISHGregdwtwryriwewfsqedidvrfvgpykgtippde-phppypprlqdeppqlpaplrtdggyaagv 89  Chaetomium globo...
EAA61504    239 ARFMVVGDSISHGmeddwtwryrlsqwmehngythhfvgpwtgtrgmdpisisqprapllpdeepredytgkslgdyakg 318 Aspergillus nidu...
BAE63679     57 LKVMIVGDSMSQGregdwtwrfriwewfkdqglpvdfvgpyngtaqsd----lpslpatpsgkeeshwkseirtsggyaa 132 Aspergillus oryzae
EAT77985     25 IRYMPFGDSITDDvcwrfklwerlqgtefas-------------------------------------vsfvgssthdrn 67  Phaeosphaeria no...
EAQ85265     21 VKVMLLGDSITEItcwrpmvwdqltaaglagnv----------------------------------dfvgsmnsiqgsc 66  Chaetomium globo...
Feature 1                  #                                                                #   
CAA84537    487 angityDTDHAGFSGYQIkevpswgqqqggkgs------------------lynelknndvvkktqPDIILLMIGTNDlt 548 Ruminococcus fla...
EAQ86418     68 gcgfdyDGENEGHGGFLAtniasqnql-------------------------------vgwlsqtePDVVMMHLGTNDvw 116 Chaetomium globo...
ZP_01086237  45 sgdtasDRDHWGRPGWGIsrtdaaiggrnyvslqanegpqgairdglfqdldqaistsyfsreqeaINVLLLMIGSNDiv 124 Synechococcus sp...
CAB55348     96 gqsvkyDDNHAGYSGYTItnlpggwfgqlngi--------------------letmqggdyikkysPDIILLQIGTNDvs 155 Ruminococcus fla...
CAD91236     74 gcgvahDGDNEGHGGYLAtnianqnll-------------------------------pgwlsatrPDIVVMHLGTNDvw 122 Nonomuraea sp. A...
EAQ90467     90 hpdflsNCHHFAASGQQAyvakdlva---------------------------------eqvaayqPDLCLVQLGFNDlg 136 Chaetomium globo...
EAA61504    319 vsqsfrDKGHASFWGRQVaqskeqfk---------------------------------awvseynPDYLLILLGFNDlg 365 Aspergillus nidu...
BAE63679    133 gvsedfDKDHFAIWGRAVaidkgliy---------------------------------dvlaaypTDLILLMLGFNDma 179 Aspergillus oryzae
EAT77985     68 ctdtkyDRNHEGHSGFLAveiakqnql-------------------------------egwlkanpADVITMHLGTNDiv 116 Phaeosphaeria no...
EAQ85265     67 qkpsgfDANHEGHSGWQAydiarnni--------------------------------vgwvqntkPDIVQFMLGTNDvn 114 Chaetomium globo...
Feature 1                                                                                       
CAA84537    549 an------------------------rsmdACTADLRSMLDYMLgd----mPSGGMIFLCSVPehtaygg---------- 590 Ruminococcus fla...
EAQ86418    117 sn------------------------lspsTILGAFDTLVEQMRas----kPTMKILVAQIIPmnppnca---------g 159 Chaetomium globo...
ZP_01086237 125 hqvveqrdgavaagdrnndgqgeqqnriaeASIDRLKAFLDEVNrlaareeLQLELIVATIPTiteawnrdrlrdpissv 204 Synechococcus sp...
CAB55348    156 ng-------------------------hldGSEERLHKLLDYLRen----mPSNGKVFLTTIPdlgnsgwg-------gn 199 Ruminococcus fla...
CAD91236    123 sn------------------------iapaTILSAFTTLVNQMRag----nPNTKILVAKIIPmnpssca---------e 165 Nonomuraea sp. A...
EAQ90467    137 wrm-----------------------cgpaVTLASIGQLLEEARsa----kPDLKFAVANVPQrtdipgre--------d 181 Chaetomium globo...
EAA61504    366 wwv-----------------------ngpeALVGDMANLINDARka----kSDIKLLVGNVVDrtfipgrq--------d 410 Aspergillus nidu...
BAE63679    180 wfh-----------------------tdaaGTVDSMQTFILNARat----nPRLKFAIANVPQrtfisgre--------d 224 Aspergillus oryzae
EAT77985    117 hm------------------------tltsDIIAAYTKLVATMRsc----nPRMKIVVAQILPvdlgga----------- 157 Phaeosphaeria no...
EAQ85265    115 igk-----------------------rnaqSIIDSYTTMLNAMRaa----nPNVKVIIDKLIPtswsd------------ 155 Chaetomium globo...
Feature 1                                                     #  #                 
CAA84537    591 ntqkiaNYNNTVKSVAEEyankgknVRFADVHgcldgm--ndissqDHLHPNGTGYKKMGNFFAGVI 655 Ruminococcus flavefaciens
EAQ86418    160 cgqrvvNLNEAIAEWAPTvttaespITVVDCWtgfdt----asmtgDGVHPNENGNDAMAKCWYGPL 222 Chaetomium globosum CBS 148.51
ZP_01086237 205 ilqelrEYNDFIRDTLPDlrysqlrLRVVDQFkavg------ndliDGLHPSSQAFERMAATWGEAI 265 Synechococcus sp. WH 5701
CAB55348    200 sngdiaKYNELIKKVANDyss--knVIYADIHsvida----skdlaDGVHPNAGGYEKMGKYWLEQI 260 Ruminococcus flavefaciens
CAD91236    166 caqrtvNFNDAIPAWAAAtttpqspITVVDQWtgfst----atdtyDGVHPNAAGDQKMSDKWYPAL 228 Nonomuraea sp. ATCC 39727
EAQ90467    182 lprdtdLYNDMLAQAIHSwdtvkspVALVCFCenyscggsnsdaayDGLHPNALGEYQLAQAFSRTL 248 Chaetomium globosum CBS 148.51
EAA61504    411 lvdetaQYNKLLKESMKDwyregspISYVDVNsnyncrpggcpdghDGLHPNALGEYHIAQSFARVL 477 Aspergillus nidulans FGSC A4
BAE63679    225 lpvstnIYNALLREAIPGwstpdspVQLVELHenydcapiacpvgyDGLHPNAKGEYQIARAFTLTL 291 Aspergillus oryzae
EAT77985    158 ynahiqELNAAIPSWAKSlnqtkspIWVVDQYtgivs-----sdlrDGVHPSDSGDEKMMNVWYPAL 219 Phaeosphaeria nodorum SN15
EAQ85265    156 --atveAVNTAIPGWVSShtttqspIVIADCSraagft--nnmlrgDGVHPNDQGDKFIAQAVGPKL 218 Chaetomium globosum CBS 148.51

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