1IB8


Conserved Protein Domain Family
YlxS_C
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cd01734: YlxS_C 
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Bacillus subtilis YxlS-like, C-terminal domain
YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.
Links
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Statistics
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PSSM-Id: 212481
Aligned: 243 rows
Threshold Bit Score: 47.0564
Created: 22-Sep-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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putative RNAputative
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:by similarity to other members of this superfamily
  • Comment:Residues within loops 3 and 5 of the SM1 motif bind RNA
Scroll to Sequence Alignment Display
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                                                 # #                 #             
1IB8_A        88 GLERPLKTKDAVAGAVGKYIHVGLYqaidkqKVFEGTLLAFEEDELTMEymdktrkkTVQIPYSLVSKARLAVKL 162 Streptococcus pneumo...
YP_002772918  82 GAERPLRKDKDFTKAVGRNVHITTKepiegaTTFEGELVSYEDGKLTVKea----kkTYVISQEQIDTARMAIIF 152 Brevibacillus brevis...
YP_001394817  84 GIERTLYTHEHLKRYIGFNVIVNIQgllkgkKKYQGKLLSFDESVLRVSce----geEIVIPKSKISTVNLKDDL 154 Clostridium kluyveri...
CBZ04257      83 GIDRVLYTDKHLEKYKGYNIVLNLYspidkkKKYEGELVDFNENEIDIKve----enIVTIPREKISKTTLKGEL 153 Clostridium botulinu...
YP_004396123  84 GIERILHTDEHLHKYINNQIVIKLAklfegsREHQGKLLSFNDESITMEkd----neNVSIPRDRIKKIILKGEF 154 Clostridium botulinu...
NP_781902     83 GLERQLYDDKHIEDNIGKTACVRLEslfnggRKFEGKLKSFDNENLTLEin----aeDFKIPRKKIKRINLIYEG 153 Clostridium tetani E88
EHP48232      84 GLNRRLHSDEHFNRFIGKEVFVGFKsslsgrKNVKGILKDVQENEIIVEce----gnEIKVPKDKIKTANLEGEI 154 Clostridium perfring...
YP_003399035  82 GIDRPLKKDKDLEAHYGQKVDLAFFapyegkKQLTAVLKSHDAEKLVLEdak---kkKLAIERKLIASVRPHIDF 153 Acidaminococcus ferm...
YP_003825620  83 GVERPLKKEKDFLKYIGSEVEIKVFepiagkKAFTGTLIDYKDGSVVLRvd----ssIINIPHEKISSAKLKFKF 153 Thermosediminibacter...
YP_004679467  87 GVNRPLTRDKDFINYIGYAIKLTTKipignrRRFKGVLKEFSNNELSIElkd--nngIIKINKNNIMEANLLFEK 159 Candidatus Midichlor...

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