Conserved Protein Domain Family
Tet_like_IV

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cd01684: Tet_like_IV 
EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Statistics
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PSSM-Id: 238841
Aligned: 22 rows
Threshold Bit Score: 159.374
Created: 23-Jul-2004
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAB05246    418 VIYMERPLKNAEYTIHIEVPPNPf-wASIGLSVAPLPLGSGVQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLY-GWNVT 495 Gardnerella vagi...
Q46306      426 TIYKETPKGFGASIMHMQEDLNPf-wATVGLEIEPAGRGEGLRYISNVSVGSLPKSFQNAIEEAVIKTSKQGLF-GWEVT 503 Clostridium perf...
CAC14348    422 VRFLERPAGTGEAAEEMPWLDRTryfATIGLRVEPGPRGSGGAFGYETELGALPRAFHQAVEETVHDTLRTGLT-GAAVT 500 Streptomyces coe...
NP_354354   425 VICVERLSGSGQGLQTIFREPNPf-fATIGLRVEPRPDGAGNSFALEVEFGQMPASFYRAVEETVFDTLKQGVF-GWQVQ 502 Agrobacterium tu...
BAB80681    404 ILYKETLNEEVIGYGHFEPLGHY---SEVHLKIEPLERNSGIVFENKCHADDLTVGNQNLIRTHIFECEHKGILtGSPIT 480 Clostridium perf...
CAD62766    404 ILYQETITQAVEGVGHFEPLRHY---AEVHLLLTPAPRGSGLQFTTDCSLEVLGRNWQHQVVSNLQAKTQVGVLiGAPLT 480 Lactobacillus pl...
NP_828683   425 PICVERPVGTGAAVEFNGKGPHPf-lATVGLRVEAAPVGSGVEFRLEVELGAMPYAFFKAVEDTVRETLGQGIH-GWRVT 502 Streptomyces ave...
NP_979380   424 VVCIEKPIGIGISVEIIGEKTNPf-yATVGFKVERGELNSGITYKLGVELGSLPLAFHKAIEDTVFQTLKQGLY-GWEVT 501 Bacillus cereus ...
BAD66258    424 VVCIEKPSGVGAAVEWIGEKGNPf-yATLGFRVEPGPEGSGLSYQLEAELGSLPPAFQRAVRDTCRVVLQEGLK-GWAVE 501 Bacillus clausii...
ZP_01028823 409 ILYKETIAAPIEGIGHFEPLRHY---AETHVLLEPLPQGSGMAYATVCSEDVLDRNWQRLIMQHFQEREHLGVLtGSPIT 485 Bifidobacterium ...
AAB05246    496 DCKICFKYGLYYS------------PVSTPADFRMLAPIVLEQVLKKAG 532 Gardnerella vaginalis
Q46306      504 DVKVTLSCGEFFS------------PASTPADFRNVTPMVFMEALYKAQ 540 Clostridium perfringens
CAC14348    501 DYRVTLIRSGFSS------------PLSTAADFRGLTPLVLRRALARAG 537 Streptomyces coelicolor A3(2)
NP_354354   503 DCHVAMTAARHTS------------PSSTAADFRKLTPWVLGTALKQAQ 539 Agrobacterium tumefaciens str. C58
BAB80681    481 DLKITLLTGRAHN------------KHTSGGDFREATKRALRQGLESGE 517 Clostridium perfringens str. 13
CAD62766    481 DVKVTLVSGRASN------------VHSVGGDFREATWRALRQGLMMLN 517 Lactobacillus plantarum WCFS1
NP_828683   503 DCTVTMTHSGYSPrqshahqgfdksMSSTGADFRGLTPLVLMDALRQAG 551 Streptomyces avermitilis MA-4680
NP_979380   502 DIIVTLTHTGYAS------------PVTTASDFRNLTPLVLMDALKKAE 538 Bacillus cereus ATCC 10987
BAD66258    502 DIIVTLTHTGYWS------------PVSTARDFRGLAPLVLMEALRQAG 538 Bacillus clausii KSM-K16
ZP_01028823 486 DMRITLLTGRAHL------------KHTEGGDFRQATYRAIRQGLMEAK 522 Bifidobacterium adolescentis
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