1JJ2,2ZKR


Conserved Protein Domain Family
Ribosomal_L7_archeal_euk

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cd01657: Ribosomal_L7_archeal_euk 
Click on image for an interactive view with Cn3D
Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes.
Statistics
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PSSM-Id: 100099
View PSSM: cd01657
Aligned: 71 rows
Threshold Bit Score: 123.406
Threshold Setting Gi: 67623361
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 41 residues -Click on image for an interactive view with Cn3D
Feature 1:23S rRNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ###     ### ## #### #####        ######  ## ###                 #         
1JJ2_V         1 MHALVQLRGEvnmHTDIQDTLEMLNIHHVNHCTLVPET-DAYRGMV-AKVNDFVAFGEPSQETLETVLATRAEPLegdad 78  Haloarcula mari...
O05642         4 LIGVIRIRGWaatPWYIQDTLSMLRLKNAFNAMIYPKD-SSIQGML-NLVSSYVTWGELNDEGLRLLVSKLEISRgk--k 79  Sulfolobus acid...
YP_001581734   4 AVLVVRIKGQadcPYWASTTMDLLKLERKYRAVILPAK-DNLLGML-KKVQHYVAWVDLDTELAQELIDKKARKSgy-kk 80  Nitrosopumilus ...
YP_875267      4 AYIVVRIKGQadvPHWAETTLKLLRLEKKHRATIIQSK-ENTRGML-DKVKHYVAWQEIDAGLAMELLTKRGRGPgy-kk 80  Cenarchaeum sym...
NP_559126     12 RYAVIRLRGIpttPRDIAVTLDLLRLRRKFTMVVVKGS-PSVMGMI-QKVNDWVTWGEIDADTLAEVLRKRGRIVgd-kp 88  Pyrobaculum aer...
YP_001540876  17 IVAAVRIRGLvdvSPEVNHTLNLLRLRRRFTCSVYVLS-DSIKGML-KSVESWATWGELSRDTLIQLLRRRGRIVgd-lp 93  Caldivirga maqu...
NP_147166      3 LYAVIRIRGTvdvPPDIDKTLYLLRLRRRYTASIYHDSlPGLRDML-RTVEAWTTYGEIEERVLEELLRKRGRIVgd-kp 80  Aeropyrum perni...
YP_919648      3 LYLVIRLRGQpdrRPEEEKALELLRLHKVYHAVLVKDD-PSIKGMLeRTLSSAVTWGEINKETLVELLKRRGRITgn-kr 80  Thermofilum pen...
Q9UX86         4 LLGIIRIRGWakaPWYINETLNMLRLRYNFNTMVYPKT-SQILGML-NKVSPYITWGEIDPDTLKLLIINRLETVkg-dk 80  Sulfolobus solf...
NP_376290      4 LLGIIRIRGYagtPWYIQDTLKMLRLPRRFNAMVYEDS-SSIRGML-KIAEPYITWGELNEEGLKLLLTRLHTKIgn-lk 80  Sulfolobus toko...
Feature 1                                                                 ########         ##   #
1JJ2_V        79 VDDEWVAEhtdYDDISGLAFALLSee----tTLREq---------------GLSPTLRLHPPRGGHDgvk-hpVKEGGQL 138 Haloarcula mari...
O05642        80 VNEEYVKDk-lNVDFQSFVESIKDgkl--rlNKLDe---------------IFSLPIRLHPPKGGFKgkvsrpFRAGGEF 141 Sulfolobus acid...
YP_001581734  81 VTPEDLKEl-gYASSAELAAALTEgk---tmLSKLk---------------PLKPWFALAPPRHGFKrstkrlYGQKGIL 141 Nitrosopumilus ...
YP_875267     81 LTEKDLEGt-dYPGIKELADALATgk---asMSKId---------------RIKPWFALAPPRHGFKrstkkmYGQKGVL 141 Cenarchaeum sym...
NP_559126     89 LTLEYLQKw-gWHSFEEIALAYVAgei--dsLSCGkkmrikeg-erppcipYLKPFFRLHPPRGGLNsvk-lhFSVGGDL 163 Pyrobaculum aer...
YP_001540876  94 LTDEYLKKy-gWGSVEELVDAYLKgev--ksLWCRrgegprmingkascipGLKPFFRLHPPKGGFKgsikkpYGAGGEL 170 Caldivirga maqu...
NP_147166     81 LTDKWVEEnlgLSGLGELAEKLVSgelhyhrLEEK----------------GVKPFFRLHPPRGGFKksikrmFRDGGEL 144 Aeropyrum perni...
YP_919648     81 LTEEYLKKi-gFNSFEELAEALISgk---vsLEDLp---------------GVKPVFRLRPPSGGFRgtirrnINARGEL 141 Thermofilum pen...
Q9UX86        81 VSDSYVKEvlkIENIDAMVKQLYEgki--ylHKLDe---------------YFKLPIRLHPPRGGFKgsvkrpYKNKGEF 143 Sulfolobus solf...
NP_376290     81 ITDDILKSqlkIESYNLFVKKIMDgei--klHKLDd---------------YFKLPIRLHPPSGGFKgkinrpFSVKGEF 143 Sulfolobus toko...
Feature 1                       #
1JJ2_V       139 GkhdtEGIDDLLEAMR 154 Haloarcula marismortui
O05642       142 Gyr-gDKINELIRRMV 156 Sulfolobus acidocaldarius
YP_001581734 142 Gr--nKELATIVRNMI 155 Nitrosopumilus maritimus SCM1
YP_875267    142 Ga--nRELSELVRSMI 155 Cenarchaeum symbiosum A
NP_559126    164 Gyr-gPLINDLIRRML 178 Pyrobaculum aerophilum str. IM2
YP_001540876 171 Gyr-gLDINDLILRMI 185 Caldivirga maquilingensis IC-167
NP_147166    145 Gyr-gSAINELILKML 159 Aeropyrum pernix K1
YP_919648    142 Gyr-gADINNLVLRML 156 Thermofilum pendens Hrk 5
Q9UX86       144 Gyr-gDKINELMRRMV 158 Sulfolobus solfataricus
NP_376290    144 Gyr-gEKINELIKRMV 158 Sulfolobus tokodaii str. 7

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